Tag: omics

Solving an eDNA Mystery with the Northern Gulf Institute

From the desk of CSI: Miami (Fish Edition): Solving an eDNA mystery. NGI Associate Research Professor Luke Thompson and NGI Postdoctoral Associate Sean Anderson have been studying the environmental DNA (eDNA) left behind by fish at the University of Miami dock (pictured), near the NOAA Atlantic Oceanographic and Meteorological Laboratory in Miami, Florida. When they analyzed the data, while many of the fish species detected were expected for the area, they were surprised by several unexpected species, such as rainbow trout. To help solve this mystery, Luke and Sean sent out a survey to fish biologists with expertise in this region.

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Bringing New Technologies to Fisheries Surveys with the Northern Gulf Institute

From March to May, NGI Postdoctoral Associate Sean Anderson is taking part in two legs of a NOAA Fisheries survey in the Gulf of Mexico on board NOAA Ship Pisces. The NOAA project, “Environmental DNA Enhancement of Fisheries Independent Monitoring Cruises for Ecosystem Based Fisheries Management”, seeks to improve ecosystem-based fisheries management (EBFM) with the use of environmental DNA (eDNA) sequencing. Camera traps (pictured) placed at the seafloor in the Gulf of Mexico capture video of passing fish, while bottles collect seawater that the fish have passed through, leaving behind DNA traces.

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The Importance of ‘Omics in NOAA Research

In February 2020, the NOAA ‘Omics Strategy was launched. The Strategy was informed by a whitepaper that recently became available on the NOAA Institutional Repository. This document titled NOAA ‘Omics White Paper: Informing the NOAA ‘Omics Strategy and Implementation Plan, identifies NOAA’s priorities in ‘omics research, promotes integration and communication among line offices, and proposes possible solutions to implementation challenges in this quickly advancing sector of research.

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Update to the BEACHES Study: Children Visiting Beaches with Open Wounds are More Susceptible to Bacterial Infection

A new paper appearing in the International Journal of Environmental Research and Public Health examines how the presence of children’s open wounds and abrasions during play at the beach may put them at greater risk of skin infections from marine bacteria and other pathogens they encounter. The study finds that children with existing or newly-acquired wounds while at the beach are more susceptible to infection.

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Two Bacteria Types Linked With Stony Coral Tissue Loss Disease Hint At How This Deadly Disease Might Spread

New research on stony coral tissue loss disease reveals similar “bacterial signatures” among sick corals and nearby water and sediments for the first time. Results hint at how this deadly disease might spread, and which bacteria are associated with it, on Florida’s Coral Reef.

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NOAA Premieres Strategies Focused on Emerging Science and Technology

At the 2020 international Ocean Sciences meeting, AOML microbiologist Kelly Goodwin helped NOAA unveil a new strategy for how the agency will dramatically expand its use of ‘Omics in the coming years. The ‘Omics strategy is one of four blueprints NOAA premiered that will guide transformative advancements in the quality and timeliness of its science, products, and services. 

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Women’s History Month: Omics with Kelly Goodwin

In honor of Women’s History Month, NOAA Research recently featured AOML microbiologist, Kelly Goodwin, in an article which gives readers a look inside the daily life of a researcher.  Kelly is a co-chair of the task force that’s laying out the plan to implement NOAA’s Omics Strategy, one of four science and technology strategies that aim to guide transformative advancements in the quality and timeliness of NOAA science, products and services.

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Moonlit coral spawning event will shed light on coral resilience in the Florida Keys

Last week AOML and CIMAS coral researchers, Graham Kolodziej, Anderson Mayfield, and Derek Manzello, entered the ocean off of the Upper Florida Keys to collect tiny floating balls being released from the protected mountainous star coral (Orbicella faveolata). Taking place shortly after moonrise, the spawning process is a visually beautiful part of the circle of life for corals, releasing gametes into the ocean water to become fertilized and eventually settle to create new corals stony coral colonies.

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Using Autonomous Vehicles for Ecosystem Assessments

Scientists from NOAA and the Monterey Bay Research Institute (MBARI) are teaming up on June 3-4, 2019 to conduct a complex mission which will integrate acoustic measurements and autonomous sample collection for analysis of environmental DNA (eDNA).  Through these efforts NOAA scientists hope to develop faster and cheaper ecosystem assessment methods, ensure sustainable fisheries and broaden our understanding of life in the oceans.

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BEACHES Study Promotes Health & Safety for Beachgoers

Few accessible places represent Earth’s natural beauty quite like our beaches, but looks can be deceiving if there is a bacterial outbreak or contamination from offshore activities. Not being able to see these contaminants puts families at risk of exposure if they aren’t properly warned. The BEACHES project (Beach Exposure And Child Health Study), a collaboration between the University of Miami’s College of Engineering and the Cooperative Institute for Marine and Atmospheric Studies and AOML, along with the Universities of Arkansas and Texas, aims to pair child behavioral science with microbiology to address exposure risk of beachgoers.

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