Experimental Reef Lab

The Experimental Reef Lab

A tool for simulating dynamic future conditions on contemporary reef organisms

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 Our Research

The Experimental Reef Lab (ERL) at the University of Miami was designed and built by scientists at AOML and the Cooperative Institute for Marine and Atmospheric Science (CIMAS) for the purpose of finely manipulating temperature, pH, light and dissolved oxygen to mirror projected ocean conditions for coral research. Using custom-built technology, these conditions can be controlled with a high  precision and accuracy.

With the fully-automated logging and control system, scientists at AOML can monitor and manipulate multiple seawater parameters in real time.

Explore the capabilities of ERL and what we’ve built by clicking the icons below: 

 

Who We Are

| Ian Enochs, Ph.D.

Principal Investigator

| Michael Studivan, Ph.D.

Associate Scientist

| Ana Palacio, Ph.D.

Associate Scientist

| Emma Pontes, Ph.D. 

Postdoctoral Associate

| Bailey Ross

Research Associate

| Richard Karp, Ph.D. 

Postdoctoral Associate

| Michael Jankulak

Data Manager

| Albert Boyd

Coral Carbonate Chemist

| Patrick Kiel

Ph.D. Candidate

| Kenzie Cooke

Ph.D. Student

Top News

Scientists at AOML push boundaries to investigate coral resilience of mesophotic reefs 

Flower Garden Banks National Marine Sanctuary (FGBNMS) consists of 160 miles of dispersed banks with underwater mountains, ridges, and troughs over 80 miles off the coasts of Texas and Louisiana, and it hosts the highest recorded coral cover of any reef within the greater U.S. Atlantic region. While the relatively shallow coral reef caps of […]

Scientists at AOML push boundaries to investigate coral resilience of mesophotic reefs 

Read More News

New study indicates Stony Coral Tissue Loss Disease may be inhibited by warmer waters 
Ana Palacio and Stephanie analyze coral fragments in a white tank with seawater in the Experimental Reef Lab with blue tee shirts and with blue lights on the coral fragments
Image of tanks in the experimental reef lab. Photo Credit: NOAA. Environmental Reef Lab Tanks. Photo Credit: NOAA. Two white robotic arms hang over a series of tanks under the blue light with a black circle at the end where the pipettes attach
MIAMI—A new study found that seafloor sediments have the potential to transmit a deadly pathogen to local corals and hypothesizes that sediments have played a role in the persistence of a devastating coral disease outbreak throughout Florida and the Caribbean.

KEYIMPACTS

Research Key Impacts 

ERL was first designed in 2016. Since then, we’ve completed a variety of experiments and published numerous papers highlighting the impacts of disease, changes in pH and greater sea surface temperatures on essential reef-building coral species while leveraging the technology in this space. In 2024, we completed the building of our newly renovated ERL2 with all new capabilities that are already enabling us to scale up these efforts. With the added ability to manipulate dissolved oxygen levels within each tank, we can investigate the impacts of hypoxia (lower-oxygen levels) on corals and identify key thresholds. Adding to this, we can expose corals to multiple environmental stressors – combinations of lower pH and hypoxic conditions, disease and greater sea surface temperatures, etc – all to mirror expected future ocean conditions and understand how coral reefs will be impacted – while seeking new and innovative ways to enhance their resilience.  

Explore Our Current Multistressor Experiments within ERL

Explore our Experimental Reef Lab Tank Data in Real-Time

Click the icon to see what is happening in all of these aquaria in real-time. We are constantly manipulating the sea surface temperature, pH, dissolved oxygen levels and additional factors that we’re exposing key coral species to, and this data viewer shows what conditions we are changing while performing active experiments.

Module21

Driving Innovative Science

With Experimental Design

AOML’s Ocean Chemistry and Ecosystems Division has taken a visionary approach to answering our most pressing questions about coral reef health by embracing new technology to engineer in-house solutions. This lab was built with in-house materials and technology from the Advanced Manufacturing and Design Lab. 

While exposing corals to various oceanic conditions, we can manipulate the seawater chemistry in real-time on the touch screen above all aquaria, and we can add dynamic set points that change hourly to mimic the natural variability that occurs on coral reefs (e.g. changes in temperature between day and night).

Independent Controller System

 

Coral reefs naturally experience diurnal (daily) changes in O2 (Oxygen) concentration and pH due to numerous processes such as daytime photosynthesis as well as respiration. Ocean acidification will lower the average pH that reef organisms experience and it will also change the range of conditions that they experience. 

All aquaria can be programmed to manipulate the chemistry in real-time on the screen, and we can add dynamic set points that change hourly to mimic the natural variability that occurs on coral reefs.

Primary Dashboard

 

To see what is happening in each of the 16 tanks, we have integrated a primary control system that displays the fluctuations in conditions over a 24-hour period  and communicates with the independent control systems (i.e. touch screens) on each tank.

Managing Seawater Chemistry within Each Aquarium

 

Our team designed and built the Sump system as a way to deliver precise gas mixtures that manipulate the seawater constantly flowing through each of these aquaria. Based on communications with the control system, we can automate changes in pH, temperature, and dissolved oxygen levels, exposing corals to ocean acidification, hypoxia and greater temperatures with high precision and accuracy. Changing gas concentrations – specifically carbon and nitrogen – before they reach each tank means we can expose coral fragments to conditions like acidification and hypoxia.

Maintaining A Filtration System

Performing these experiments across each independent aquarium requires infrastructure to constantly circulate seawater and maintain consistent water quality so that we are only examining a coral’s response to changes in those conditions that we are finely manipulating. With the Experimental Reef Lab, we have a filtration system that brings seawater from Biscayne Bay into the lab.

Integrating Robotic Automation

 

In the Experimental Reef Lab, scientists at NOAA’s Atlantic Oceanographic and Meteorological Laboratory (AOML) and the Cooperative Institute for Marine and Atmospheric Studies (CIMAS) are investigating how crucial reef-building coral species are affected by the impacts of environmental stressors  using a suite of open-source robotic arms designed and built at AOML. Jump to see how they’re being implemented in restoration pipelines. 

Explore the STAR System

AE

Designing the Experimental Reef Lab 

Scientists at AOML designed and built a variety of the technology within the Experimental Reef Lab. Leveraging the Advanced Manufacturing and Design Lab (AMDL), the team created designs of the new system using open-source software, printed various components and tested their durability throughout each stage of the buildout. 

 

Explore open-source CAD designs of the newly renovated Experimental Reef Lab here

A three-dimensional animation of a series of tanks aligned in four rows, demonstrating the new design to the ERL2

EA

Imagined and Built in 3D

Independent Tank Systems Custom Built with 3D Printers

View on SketchFab

Experimental Applications

Click each section to learn more about our research and how we’ve used the Experimental Reef Lab to examine coral resilience to specific environmental conditions.


Investigating the Impacts of Multiple Environmental Stressors

Investigating the Impacts of Multiple Environmental Stressors 

The Florida Regional Ecosystems Stressors Collaborative Assessment, or “FRESCA,” is a four-year collaborative effort co-led by scientists at AOML and the University of Miami and involving seven research institutions to assess the current and future impacts of five key environmental stressors expected to become exacerbated across South Florida: ocean acidification, hypoxia, ocean warming, harmful algal blooms, and eutrophication

Module 2, organized into three overarching experiments, is dedicated to determining how habitat-altering species of coral, bioeroders (i.e. sponges) and photosynthetic organisms are impacted by three environmental stressors: ocean acidification (OA), temperature, and hypoxia (oxygen-deprivation). 

Explore FRESCA Module 2 here

Understanding Reef Erosion in Acidified Oceans

Understanding Reef Erosion in Acidified Oceans 

Bioeroders and calcifying organisms can have significant impacts on coral reefs, especially under changing climate conditions. Using incubation chambers designed and built in AOML’s Advanced Manufacturing and Design Lab, scientists are able to directly measure short-term calcification/dissolution rates of various calcifying and bioeroding organisms. Alkalinity of seawater changes based on the amount of calcification/ dissolution that occurs throughout an incubation period. This means that by analyzing the seawater chemistry at the start and end of an incubation, the change in total alkalinity can be used to measure calcification/dissolution that occurred during that period. In addition, the upper chamber can be swapped with a dark-chamber to further quantify day versus night calcification/dissolution rates. These chambers have been successfully used with multiple reef organisms.

Examining Coral Disease Transmission

Examining Coral Disease Transmission 

Scientists at AOML have developed a system designed for housing coral disease transmission experiments. Precise temperature control is achieved by regulating the water around the chambers, and a seawater manifold system directs fresh seawater into every unit. Each chamber is completely independent of the others, and as a result this system enables a degree of replication which is not often seen in coral disease experiments. 

Explore Our Disease Research


Variable temperature treatments to understand coral response to thermal stress

Variable Temperature Treatments to Understand Coral Response to Thermal Stress 

Previous studies performed within the Experimental Reef Lab have demonstrated how reef-building coral species exposed to above-average temperature treatments enhanced their thermal tolerance and were less susceptible to bleaching. With 16 independent aquaria we can expand these efforts and expose corals to different temperature ramps while investigating how different coral species respond to thermal stress with the hope of enhancing their resilience.

 

STAR - Using Robotic Automation to Investigate Ocean Acidification

STAR – Using Robotic Automation to Investigate Ocean Acidification 

 

These robots can dose individual incubation jars containing coral fragments with precise levels of  CO2 gas, effectively altering the seawater chemistry to expose corals to a lower range of pH treatments. A pH and temperature sensor on each robot also streamlines the monitoring of the changing conditions to ensure they don’t stray from the intended thresholds during an experiment. This enables scientists to scale up investigations into how ocean acidification impacts different species and maintain specific conditions within each incubation jar. 


Examining Coral DIsease Applying ‘Omics to Examine Coral Response to Environmental Stressors

Applying ‘Omics to Examine Coral Response to Environmental Stressors 

Before and after ongoing experiments exposing corals to heightened conditions, we sample coral tissue and apply ‘Omics techniques to investigate the mechanisms driving how a genotype responds to those conditions. With the rapid spread of coral diseases, AOML’s Coral Program and ‘Omics team are part of a multi-agency, interdisciplinary effort to identify novel mitigation strategies at local and regional scales. Our research is therefore focused on two critical aspects of disease dynamics: 1) understanding environmental and genotypic factors that influence disease transmission, and 2) evaluating disease mitigation strategies, including treatment of infected corals and potential vectors.

We are leading stewards of a cleaner, healthier, more sustainable ocean.

We are using state of the art techniques for measuring coral growth and calcification. This video shows how we can assemble hundreds of x-ray images into a 3D model of endangered staghorn coral. This type of analysis allows us to look at skeletal density, structure, and coral growth in very high detail. These aspects of the coral will be influenced by ocean acidification and are important characteristics to consider when establishing management and restoration strategies.

Photo of a wide-branching Acropora Cervicornis on the reef.

Featured Publication

Marked annual coral bleaching resilience of an inshore patch reef in the Florida Keys: A nugget of hope, aberrance, or last man standing?

Annual coral bleaching events, which are predicted to occur as early as the next decade in the Florida Keys, are expected to cause catastrophic coral mortality. Despite this, there is little field data on how Caribbean coral communities respond to annual thermal stress events. At Cheeca Rocks, an inshore patch reef near Islamorada, FL, the condition of 4234 coral colonies was followed over 2 yr of subsequent bleaching in 2014 and 2015, the two hottest summers on record for the Florida Keys. In 2014, this site experienced 7.7 degree heating weeks (DHW) and as a result 38.0% of corals bleached and an additional 36.6% were pale or partially bleached. In situ temperatures in summer of 2015 were even warmer, with the site experiencing 9.5 DHW. Despite the increased thermal stress in 2015, only 12.1% of corals were bleached in 2015, which was 3.1 times less than 2014.

Partial mortality dropped from 17.6% of surveyed corals to 4.3% between 2014 and 2015, and total colony mortality declined from 3.4 to 1.9% between years. Total colony mortality was low over both years of coral bleaching with 94.7% of colonies surviving from 2014 to 2016. The reduction in bleaching severity and coral mortality associated with a second stronger thermal anomaly provides evidence that the response of Caribbean coral communities to annual bleaching is not strictly temperature dose dependent and that acclimatization responses may be possible even with short recovery periods. Whether the results from Cheeca Rocks represent an aberration or a true resilience potential is the subject of ongoing research.

Reef Mosaic, Bleached Reef (transect 1) shown October 9th. Photo Credit, NOAA.Bleached Reef (Oct 9)
Recovered Reef Shown November 6th (transect 1) Photo Credit, NOAA.Recovered Reef (Nov 6)

Gintert, B. E., Manzello, D. P., Enochs, I. C., Kolodziej, G., Carlton, R., Gleason, A. C., & Gracias, N. (2018). Marked annual coral bleaching resilience of an inshore patch reef in the Florida Keys: A nugget of hope, aberrance, or last man standing?. Coral Reefs, 1-15.