Scientific Papers (Abstract & PDF) Archives - NOAA's Atlantic Oceanographic and Meteorological Laboratory /category/papers/ Preparing the nation for change by studying the ocean, earth & atmosphere Tue, 03 Mar 2026 13:46:05 +0000 en-US hourly 1 https://wordpress.org/?v=6.9.1 /wp-content/uploads/2018/09/NOAA_logo_512x512-150x150.png Scientific Papers (Abstract & PDF) Archives - NOAA's Atlantic Oceanographic and Meteorological Laboratory /category/papers/ 32 32 Subsurface biogeochemical response to Hurricane Idalia within a cyclonic eddy and river plume–stratified environment /subsurface-biogeochemical-response-to-hurricane-idalia-within-a-cyclonic-eddy-and-river-plume-stratified-environment/ Mon, 02 Mar 2026 19:28:04 +0000 /?p=103884 Jennifer K. McWhorter, Lev B. Looney, et al.

Satellite observations can reveal chlorophyll blooms in the wake of hurricane disturbances but their subsurface biogeochemical anomalies remain poorly described due to limited in situ observations. Here, we quantify the biogeochemical response across the ocean water column to Hurricane Idalia (2023) in the Gulf of America (also known as the Gulf of America). We compile observations across the eastern Gulf using satellite data and two autonomous platforms: a profiling Biogeochemical-Argo (BGC-Argo) float and saildrone. Prior to the formation of Hurricane Idalia, an anomalously large extension of the Mississippi River plume spanned much of the eastern Gulf, contributing low-salinity and high-chlorophyll conditions. Following Idalia’s passage, the saildrone observed surface chlorophyll increases in the river plume extension, while the BGC-Argo float observed subsurface nitrate depletion and oxygen enrichment. These changes occurred as the float measured background ocean conditions evolving from the edge of the Loop Current to a cyclonic eddy, influenced by the river plume extension. Increases in chlorophyll concentration, decreases in nitrate, and elevated dissolved oxygen levels suggested increased primary production. BGC-Argo float observations revealed enhanced upwelling below the surface layer (~22 m) that shoaled the nitracline, fueling the increase in subsurface primary production (20–50 m depth). Our study provides a glimpse on the surface and subsurface ocean-biogeochemical changes associated with the Hurricane Idalia passage, highlighting the importance of the background mesoscale seascape on shaping the phytoplankton response to hurricane-induced disturbances. The combination of observations underscores the value of continuous in situ monitoring to better understand hurricane-driven impacts on the full ocean water column and the impacts these dynamics have on the base of the marine food web.

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Coral Reef Carbonate Chemistry Reveals Interannual, Seasonal, and Spatial Impacts on Ocean Acidification Off Florida /carbonate-chemistry-reveals-impacts-on-ocean-acidification-off-florida/ Tue, 02 Apr 2024 16:45:06 +0000 /?p=75343 A. M. Palacio-Castro, I. C. Enochs, et al.

Ocean acidification (OA) threatens coral reef persistence by decreasing calcification and accelerating the dissolution of reef frameworks. The carbonate chemistry of coastal areas where many reefs exist is strongly influenced by the metabolic activity of the underlying benthic community, contributing to high spatiotemporal variability. While characterizing this variability is difficult, it has important implications for the progression of OA and the persistence of the ecosystems. Here, we characterized the carbonate chemistry at 38 permanent stations located along 10 inshore-offshore transects spanning 250 km of the Florida Coral Reef (FCR), which encompass four major biogeographic regions (Biscayne Bay, Upper Keys, Middle Keys, and Lower Keys) and four shelf zones (inshore, mid-channel, offshore, and oceanic). Data have been collected since 2010, with approximately bi-monthly periodicity starting in 2015...

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Spatiotemporal Variation in Coral Assemblages and Reef Habitat Complexity among Shallow Fore-Reef Sites in the Florida Keys National Marine Sanctuary /spatiotemporal-variation-in-coral-assemblages-and-reef-habitat-complexity-among-shallow-fore-reef-sites-in-the-florida-keys-national-marine-sanctuary/ Mon, 18 Dec 2023 21:55:27 +0000 /?p=70621

Kayelyn R. Simmons, DelWayne R. Bohnenstiehl and David B. Eggleston

With the unprecedented degradation and loss of coral reefs at multiple scales, the underlying changes in abiotic and biotic features relevant to the three-dimensional architecture of coral reefs are critical to conservation and restoration. This study characterized the spatiotemporal variation of habitat metrics at eight fore-reef sites representing three management zones in the Florida Keys, USA using visual habitat surveys (2017–2018) acquired before and after Hurricane Irma. Post-hurricane, five of those sites were surveyed using structure-from-motion photogrammetry to further investigate coral morphology on structural complexity. Multivariate results for visual surveys identified moderate separation among sites, with fished sites characterized by complex physical features such as depth and vertical hard relief while protected sites generally harbored high abundances of live coral cover.

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Multidecadal Intensification of Atlantic Tropical InstabilityWaves /multidecadal-intensification-of-atlantic-tropical-instabilitywaves/ Thu, 26 Oct 2023 15:25:50 +0000 /?p=68172 Tuchen, F. P., Perez, R. C., Foltz, G. R., Brandt, P., & Lumpkin, R. (2022). Multidecadal intensification of Atlantic tropical instability waves. Geophysical Research Letters, 49(22), e2022GL101073.

Abstract: In the equatorial Atlantic, temperature, salinity, sea level anomaly, and ocean velocity variations on time scales of tens of days are dominated by the presence and westward passage of large-scale Tropical Instability Waves (TIWs). Several decades of satellite and surface drifter data as well as moored velocity observations show a long-term intensification of TIW activity in all of these variables in the tropical North Atlantic where TIWs are most pronounced. We find that increased high-frequency flow variability, and not long-term changes of the mean zonal current system, drives the TIW intensification. One consequence of increased Atlantic Ocean TIW activity is the corresponding intensification of the horizontal eddy temperature advection pattern in boreal summer leading to stronger cooling of surface waters north of the equator...

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Low Net Carbonate Accretion Characterizes Florida’s Coral Reef /low-net-carbonate-accretion-characterizes-floridas-coral-reef/ Tue, 29 Aug 2023 19:33:13 +0000 /?p=66012 John T. Morris, Ian C. Enochs, et al.

Coral reef habitat is created when calcium carbonate production by calcifiers exceeds removal by physical and biological erosion. Carbonate budget surveys provide a means of quantifying the framework-altering actions of diverse assemblages of marine species to determine net carbonate production, a single metric that encapsulates reef habitat persistence. In this study, carbonate budgets were calculated for 723 sites across the Florida Reef Tract (FRT) using benthic cover and parrot fish demographic data from NOAA’s National Coral Reef Monitoring Program, as well as high resolution LiDAR topobathymetry. Results highlight the erosional state of the majority of the study sites, with a trend towards more vulnerable habitat in the northern FRT, especially in the Southeast Florida region (− 0.51 kg CaCO3m−2 year−1), which is in close proximity to urban centers. Detailed comparison of reef types reveals that mid-channel reefs in the Florida Keys have the highest net carbonate production (0.84 kg CaCO3 m−2 year− 1) and indicates that these reefs may be hold-outs for reef development throughout the region. This study reports that Florida reefs, specifically their physical structure, are in a net erosional state. As these reefs lose structure, the ecosystem services they provide will be diminished, signifying the importance of increased protections and management efforts to offset these trends.

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New study establishes monitoring framework for evaluating reef persistence under climate change and ocean acidification /new-study-establishes-monitoring-framework-for-evaluating-reef-persistence-under-climate-change-and-ocean-acidification/ Wed, 02 Aug 2023 19:07:03 +0000 /?p=63903 Webb, A.E., Enochs, I.C., van Hooidonk, R. et al. Restoration and coral adaptation delay, but do not prevent, climate-driven reef framework erosion of an inshore site in the Florida Keys. Sci Rep 13, 258 (2023).

For reef framework to persist, calcium carbonate production by corals and other calcifiers needs to outpace loss due to physical, chemical, and biological erosion. This balance is both delicate and dynamic and is currently threatened by the effects of ocean warming and acidification. Although the protection and recovery of ecosystem functions are at the center of most restoration and conservation programs, decision makers are limited by the lack of predictive tools to forecast habitat persistence under different emission scenarios. To address this, we developed a modelling approach, based on carbonate budgets, that ties species-specific responses to site-specific global change using the latest generation of climate models projections (CMIP6). We applied this model to Cheeca Rocks...

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Statistical Analysis of Convective Updrafts in Tropical Cyclone Rainbands Observed by Airborne Doppler Radar /statistical-analysis-of-convective-updrafts-in-tropical-cyclone-rainbands-observed-by-airborne-doppler-radar/ Mon, 22 May 2023 21:41:53 +0000 /?p=59957 Barron, N. R., Didlake Jr, A. C., & Reasor, P. D. (2022). Statistical Analysis of Convective Updrafts in Tropical Cyclone Rainbands Observed by Airborne Doppler Radar. Journal of Geophysical Research: Atmospheres127(6), e2021JD035718.4

Abstract: Ten years of airborne Doppler radar observations are used to study convective updrafts' kinematic and reflectivity structures in tropical cyclone (TC) rainbands. An automated algorithm is developed to identify the strongest rainband updrafts across 12 hurricane-strength TCs. The selected updrafts are then collectively analyzed by their frequency, radius, azimuthal location (relative to the 200–850 hPa environmental wind shear), structural characteristics, and secondary circulation (radial/vertical) flow pattern. Rainband updrafts become deeper and stronger with increasing radius. A wavenumber-1 asymmetry arises, showing that in the downshear (upshear) quadrants of the TC, updrafts are more (less) frequent and deeper (shallower)...

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2019 Atlantic Hurricane Forecasts from the Global-Nested Hurricane Analysis and Forecast System: Composite Statistics and Key Events /2019-atlantic-hurricane-forecasts-from-global-nested-hurricane-analysis-forecast-system-composite-statistics-key-events/ Mon, 22 May 2023 21:34:15 +0000 /?p=59949 Hazelton, A., Zhang, Z., Liu, B., Dong, J., Alaka, G., Wang, W., ... & Marks, F. (2021). 2019 Atlantic hurricane forecasts from the global-nested hurricane analysis and forecast system: Composite statistics and key events. Weather and Forecasting36(2), 519-538.

Abstract: NOAA’s Hurricane Analysis and Forecast System (HAFS) is an evolving FV3-based hurricane modeling system that is expected to replace the operational hurricane models at the National Weather Service. Supported by the Hurricane Forecast Improvement Program (HFIP), global-nested and regional versions of HAFS were run in real time in 2019 to create the first baseline for the HAFS advancement. In this study, forecasts from the global-nested configuration of HAFS (HAFS-global nest) are evaluated and compared with other operational and experimental models. The forecasts by HAFS-global nest covered the period from July through October during the 2019 hurricane season. Tropical cyclone (TC) track, intensity, and structure forecast verifications are examined...

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Evaluating Satellite Sounders for Monitoring the Tropical Cyclone Environment in Operational Forecasting /evaluating-satellite-sounders-for-monitoring-the-tropical-cyclone-environment-in-operational-forecasting/ Mon, 22 May 2023 21:23:12 +0000 /?p=59937 Esmaili, R., Barnet, C., Dunion, J., Folmer, M., & Zawislak, J. (2022). Evaluating Satellite Sounders for Monitoring the Tropical Cyclone Environment in Operational Forecasting. Remote Sensing14(13), 3189.

Abstract: Tropical cyclones can form over open ocean where in situ observations are limited, so forecasters rely on satellite observations to monitor their development and track. We explore the utility of an operational satellite sounding product for tropical forecasting by characterizing the products retrieval skill during research flights. Scientists from both the NOAA-Unique Combined Atmospheric Processing System (NUCAPS) research team and tropical cyclone communities collaborated to target relevant tropical cyclones during the campaign. This effort produced 130 dropsondes that are welltimed with satellite sounder overpasses over three different tropical cyclones and one Saharan Air Layer outbreak...

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Performance of an Improved TKE-Based Eddy-Diffusivity Mass-Flux (EDMF) PBL Scheme in 2021 Hurricane Forecasts from the Hurricane Analysis and Forecast System /performance-improved-tke-based-eddy-diffusivity-mass-flux-pbl-scheme-2021-hurricane-forecasts-from-hurricane-analysis-forecast-system/ Mon, 22 May 2023 21:10:45 +0000 /?p=59929 Chen, X., Hazelton, A., Marks, F. D., Alaka Jr, G. J., & Zhang, C. (2023). Performance of an Improved TKE-Based Eddy-Diffusivity Mass-Flux (EDMF) PBL Scheme in 2021 Hurricane Forecasts from the Hurricane Analysis and Forecast System. Weather and Forecasting38(2), 321-336.

Abstract: Continuous development and evaluation of planetary boundary layer (PBL) parameterizations in hurricane conditions are crucial for improving tropical cyclone (TC) forecasts. A turbulence kinetic energy (TKE)-based eddy-diffusivity mass-flux (EDMF-TKE) PBL scheme, implemented in NOAA’s Hurricane Analysis and Forecast System (HAFS), was recently improved in hurricane conditions using large-eddy simulations. This study evaluates the performance of HAFS TC forecasts with the original (experiment HAFA) and modified EDMF-TKE (experiment HAFY) based on a large sample of cases during the 2021 North Atlantic hurricane season...

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