Abstract:

Coral cover has declined worldwide due to anthropogenic stressors that manifest on both global and local scales. Coral communities that exist in extreme conditions can provide information on how these stressors influence ecosystem structure, with implications for their persistence under future conditions. The Port of Miami is located within an urbanized environment, with active coastal development, as well as commercial shipping and recreational boating activity. Monitoring of sites throughout the Port since 2018 has revealed periodic extremes in temperature, seawater pH, and salinity, far in excess of what have been measured in most coral reef environments. Despite conditions that would kill many reef species, we have documented diverse coral communities growing on artificial substrates at these sites—reflecting remarkable tolerance to environmental stressors. Furthermore, many of the more prevalent species within these communities are now conspicuously absent or in low abundance on nearby reefs, owing to their susceptibility and exposure to stony coral tissue loss disease. Natural reef frameworks, however, are largely absent at the urban sites and while diverse fish communities are documented, it is unlikely that these communities provide the same goods and services as natural reef habitats. Regardless, the existence of these communities indicates unlikely persistence and highlights the potential for coexistence of threatened species in anthropogenic environments, provided that suitable stewardship strategies are in place.

Abstract:

To accurately predict the impacts of ocean acidification on shallow-water ecosystems, we must account for the biogeochemical impact of local benthic communities, as well as the connectivity between offshore and onshore water masses. Estimation of residence time can help quantify this connectivity and determine the degree to which the benthos can influence the chemistry of the overlying water column. We present estimates of nearshore residence time for Guam and utilize these estimates to model the effects of benthic ecosystem metabolism on the coral reef carbonate system. Control volume and particle tracking approaches were used to estimate nearshore residence time. These estimates were paired with observed patterns in the reef carbonate system around Guam using water samples collected by NOAA’s National Coral Reef Monitoring Program. Model performance results suggest that when considering the effects of benthic metabolism on the carbonate system, it is paramount to represent the contact time of the water volume with the benthos. Even coarse estimates of residence time significantly increase model skill. We observed the highest predictive skill in models including control volume derived estimates of residence time, but only when those estimates were included as an interaction with benthic composition. This work shows that not only is residence time critically important to better predict biogeochemical variability in coral reef environments, but that even coarse hydrodynamic models can provide useful residence time estimates at management relevant, whole-ecosystem scales.

Abstract:

East and West Flower Garden Bank (FGB) are part of Flower Garden Banks National Marine Sanctuary (FGBNMS) in the northwest Gulf of Mexico. This geographically-isolated reef system contains extensive coral communities with the highest coral cover (>50%) in the continental United States due, in part, to their remoteness and depth, and have historically exhibited low incidence of coral disease and bleaching despite ocean warming. Yet in late August 2022, disease-like lesions on seven coral species were reported during routine monitoring surveys on East and West FGB (2.1–2.6% prevalence). A series of rapid response cruises were conducted in September and October 2022 focused on (1) characterizing signs and epidemiological aspects of the disease across FGB and within long-term monitoring sites, (2) treating affected coral colonies with Base 2B plus amoxicillin, and (3) collecting baseline images through photostations and photomosaics. Marginal and/or multi-focal lesions and tissue loss were observed, often associated with substantial fish and invertebrate predation, affecting the dominant coral species Pseudodiploria strigosa (7–8% lesion prevalence), Colpophyllia natans (11–18%), and Orbicella spp. (1%). Characterizing this disease event during its early epidemic phase at East and West FGB provides a critical opportunity to observe how coral disease functions in a relatively healthy coral ecosystem versus on reefs chronically affected by various stressors (e.g., Caribbean reefs adjacent to urban centers). Insights into the etiology, spread, and impacts of the disease can ultimately inform efforts to mitigate its effects on coral communities.

Abstract:

Once one of the predominant reef-building corals in the region, Acropora cervicornis is now a focal species of coral restoration efforts in Florida and the western Caribbean. Scientists and restoration practitioners have been independently collecting phenotypic data on genets of A. cervicornis grown in restoration nurseries. While these data are important for understanding the intraspecific response to varying environmental conditions, and thus the potential genetic contribution to phenotypic variation, in isolation these observations are of limited use for large-scale, multi-institution restoration efforts that are becoming increasingly necessary. Here, we present the Acropora cervicornis Data Coordination Hub, a web-accessible relational database to align disparate datasets to compare genet-specific performance. In this data descriptor, we release data for 248 genets evaluated across 38 separate traits. We present a framework to align datasets with the goal of facilitating informed, data-driven restoration throughout the Caribbean.

Abstract:

Coral reef ecosystems are experiencing increased rates of carbonate dissolution due to losses in live coral cover coupled with the impacts of ocean acidification (OA) on coral reef calcifiers and bioeroders. While the stimulating effect of OA on bioerosion has been demonstrated experimentally, predominantly in the Pacific, the underlying physiological and molecular mechanisms behind the response are still poorly understood. To address this, we subjected common zooxanthellate (Cliona varians) and azooxanthellate (Pione lampa) Caribbean sponges to pre-industrial (8.15 pH), present-day (8.05 pH), and two future OA scenarios (moderate OA, 7.85 pH; extreme OA, 7.75 pH) and evaluated their physiological and transcriptomic responses. The influence of OA on sponge bioerosion was nonlinear for both species, with the greatest total bioerosion and chemical dissolution rates found in the 7.85 pH treatment, then not increasing further under the more extreme 7.75 pH conditions. A trend towards reduced bioerosion rates in the 7.75 pH treatment occurred regardless of the presence of algal symbionts and suggests that the sponges may become physiologically impaired under prolonged OA exposure, resulting in diminished bioerosion potential. These findings were supported by the RNA-seq analysis, which revealed differentially expressed genes involved in a stress response to OA, in particular, suppressed metabolism. This may indicate that the sponges had reallocated energy resources towards more critical physiological needs in response to OA as a survival mechanism under stressful conditions. These data reveal that while the bioerosion rates of excavating sponges in Caribbean reef ecosystems may increase under moderate OA scenarios, this OA-stimulation may plateau or be lost at extreme end-of-century pH conditions, with implications for the dissolution and long-term persistence of reef habitat structures.

Abstract:

The eastern tropical Pacific is oceanographically unfavorable for coral-reef development. Nevertheless, reefs have persisted there for the last 7000 years. Rates of vertical accretion during the Holocene have been similar in the strong-upwelling Gulf of Panamá (GoP) and the adjacent, weak-upwelling Gulf of Chiriquí (GoC); however, seasonal upwelling in the GoP exacerbated a climate-driven hiatus in reef development in the late Holocene. The situation is now reversed and seasonal upwelling in the GoP currently buffers thermal stress, creating a refuge for coral growth. We developed carbonate budget models to project the capacity of reefs in both gulfs to keep up with future sea-level rise. On average, the GoP had significantly higher net carbonate production rates than the GoC. With an estimated contemporary reef-accretion potential (RAP) of 5.5 mm year⁻¹, reefs in the GoP are projected to be able to keep up with sea-level rise if CO₂ emissions are reduced, but not under current emissions trajectories. With an estimated RAP of just 0.3 mm year⁻¹, reefs in the GoC are likely already unable to keep up with contemporary sea-level rise in Panamá (1.4 mm year⁻¹). Whereas the GoP has the potential to support functional reefs in the near-term, our study indicates that their long-term persistence will depend on reduction of greenhouse gases.

Abstract:

Stony coral tissue loss disease (SCTLD) remains an unprecedented disease outbreak due to its high mortality rate and rapid spread throughout Florida's Coral Reef and wider Caribbean. A collaborative effort is underway to evaluate strategies that mitigate the spread of SCTLD across coral colonies and reefs, including restoration of disease-resistant genotypes, genetic rescue, and disease intervention with therapeutics. We conducted an in-situ experiment in Southeast Florida to assess molecular responses among SCTLD-affected Montastraea cavernosa pre- and post-application of the most widely used intervention method, CoreRx Base 2B with amoxicillin. Through Tag-Seq gene expression profiling of apparently healthy, diseased, and treated corals, we identified modulation of metabolomic and immune gene pathways following antibiotic treatment. In a complementary ex-situ disease challenge experiment, we exposed nursery-cultured M. cavernosa and Orbicella faveolata fragments to SCTLD-affected donor corals to compare transcriptomic profiles among clonal individuals from unexposed controls, those exposed and displaying disease signs, and corals exposed and not displaying disease signs. Suppression of metabolic functional groups and activation of stress gene pathways as a result of SCTLD exposure were apparent in both species. Amoxicillin treatment led to a ‘reversal’ of the majority of gene pathways implicated in disease response, suggesting potential recovery of corals following antibiotic application. In addition to increasing our understanding of molecular responses to SCTLD, we provide resource managers with transcriptomic evidence that disease intervention with antibiotics appears to be successful and may help to modulate coral immune responses to SCTLD. These results contribute to feasibility assessments of intervention efforts following disease outbreaks and improved predictions of coral reef health across the wider Caribbean.

Abstract:

For reef framework to persist, calcium carbonate production by corals and other calcifiers needs to outpace loss due to physical, chemical, and biological erosion. This balance is both delicate and dynamic and is currently threatened by the effects of ocean warming and acidification. Although the protection and recovery of ecosystem functions are at the center of most restoration and conservation programs, decision makers are limited by the lack of predictive tools to forecast habitat persistence under different emission scenarios. To address this, we developed a modeling approach, based on carbonate budgets, that ties species-specific responses to site-specific global change using the latest generation of climate models projections (CMIP6). We applied this model to Cheeca Rocks, an outlier in the Florida Keys in terms of high coral cover, and explored the outcomes of restoration targets scheduled in the coming 20 years at this site by the Mission: Iconic Reefs restoration initiative. Additionally, we examined the potential effects of coral thermal adaptation by increasing the bleaching threshold by 0.25, 0.5, 1 and 2˚C. Regardless of coral adaptative capacity or restoration, net carbonate production at Cheeca Rocks declines heavily once the threshold for the onset of annual severe bleaching is reached. The switch from net accretion to net erosion, however, is significantly delayed by mitigation and adaptation. The maintenance of framework accretion until 2100 and beyond is possible under a decreased emission scenario coupled with thermal adaptation above 0.5˚C. Although restoration initiatives increase reef accretion estimates, Cheeca Rocks will only be able to keep pace with future sea-level rise in a world where anthropogenic CO₂ emissions are reduced. Present results, however, attest to the potential of restoration interventions combined with increases in coral thermal tolerance to delay the onset of mass bleaching mortalities, possibly in time for a low-carbon economy to be implemented and complementary mitigation measures to become effective.

Abstract:

Reef-building corals contain a complex consortium of organisms, a holobiont, which responds dynamically to disease, making pathogen identification difficult. While coral transcriptomics and microbiome communities have previously been characterized, similarities and differences in their responses to different pathogenic sources has not yet been assessed. In this study, we inoculated four genets of the Caribbean branching coral Acropora palmata with a known coral pathogen (Serratia marcescens) and white band disease. We then characterized the coral’s transcriptomic and prokaryotic microbiomes’ (prokaryiome) responses to the disease inoculations, as well as how these responses were affected by a short-term heat stress prior to disease inoculation. We found strong commonality in both the transcriptomic and prokaryiomes responses, regardless of disease inoculation. Differences, however, were observed between inoculated corals that either remained healthy or developed active disease signs. Transcriptomic co-expression analysis identified that corals inoculated with disease increased gene expression of immune, wound healing, and fatty acid metabolic processes. Co-abundance analysis of the prokaryiome identified sets of both healthy-and-disease-state bacteria, while co-expression analysis of the prokaryiomes’ inferred metagenomic function revealed infected corals’ prokaryiomes shifted from free-living to biofilm states, as well as increasing metabolic processes. The short-term heat stress did not increase disease susceptibility for any of the four genets with any of the disease inoculations, and there was only a weak effect captured in the coral hosts’ transcriptomic and prokaryiomes response. Genet identity, however, was a major driver of the transcriptomic variance, primarily due to differences in baseline immune gene expression. Despite genotypic differences in baseline gene expression, we have identified a common response for components of the coral holobiont to different disease inoculations. This work has identified genes and prokaryiome members that can be focused on for future coral disease work, specifically, putative disease diagnostic tools.

Abstract:

Orbicella faveolata, commonly known as the mountainous star coral, is a dominant reef-building species in the Caribbean, but populations have suffered sharp declines since the 1980s due to repeated bleaching and disease-driven mortality. Prior research has shown that inshore adult O. faveolata populations in the Florida Keys are able to maintain high coral cover and recover from bleaching faster than their offshore counterparts. However, whether this origin-specific variation in thermal resistance is heritable remains unclear. To address this knowledge gap, we produced purebred and hybrid larval crosses from O. faveolata gametes collected at two distinct reefs in the Upper Florida Keys, a nearshore site (Cheeca Rocks, CR) and an offshore site (Horseshoe Reef, HR), in two different years (2019, 2021). We then subjected these aposymbiotic larvae to severe (36°C) and moderate (32°C) heat challenges to quantify their thermal tolerance. Contrary to our expectation based on patterns of adult thermal tolerance, HR purebred larvae survived better and exhibited gene expression profiles that were less driven by stress response under elevated temperature compared to purebred CR and hybrid larvae. One potential explanation could be the compromised reproductive output of CR adult colonies due to repeated summer bleaching events in 2018 and 2019, as gametes originating from CR in 2019 contained less storage lipids than those from HR. These findings provide an important counter-example to the current selective breeding paradigm, that more tolerant parents will yield more tolerant offspring, and highlight the importance of adopting a holistic approach when evaluating larval quality for conservation and restoration purposes.

Abstract:

Given that global warming is the greatest threat to coral reefs, coral restoration projects have expanded worldwide with the goal of replenishing habitats whose reef-building corals succumbed to various stressors. In many cases, however, these efforts will be futile if outplanted corals are unable to withstand warmer oceans and an increased frequency of extreme temperature events. Stress-hardening is one approach proposed to increase the thermal tolerance of coral genotypes currently grown for restoration. Previous studies have shown that corals from environments with natural temperature variability experience less bleaching when exposed to thermal stress, though it remains unclear if this localized acclimatization or adaptation to variable temperatures can be operationalized for enhancing restoration efforts. To evaluate this approach, fragments from six source colonies of nursery-raised Caribbean staghorn coral (Acropora cervicornis) were treated with a variable temperature regime (oscillating twice per day from 28 to 31°C) or static temperatures (28°C) in the laboratory for 89 d. Following this, fragments were subjected to a heat-stress assay (32°C) for 2 weeks. Corals treated with variable temperatures manifested signs of severe thermal stress later than static temperature laboratory controls as well as untreated field controls collected from the nursery. Furthermore, there was a stark contrast in the physiological response to heat stress, whereby the laboratory and field control groups had a significantly higher incidence of rapid tissue sloughing and necrosis, while the variable temperature-treated corals succumbed to bleaching more gradually. Overall, our data show that pre-acclimation to a variable temperature regime improves acroporid thermotolerance. As corals continue to be outplanted back onto Florida’s changing reef scape, understanding the molecular mechanisms underlying this enhanced thermal tolerance and its endurance in situ will be critical for future research and restoration applications.

Abstract:

Coastal habitats are experiencing decreases in seawater pH and increases in temperature due to anthropogenic climate change. The Caribbean king crab, Maguimithrax spinosissimus, plays a vital role on Western Atlantic reefs by grazing macroalgae that competes for space with coral recruits. Therefore, identifying its tolerance to anthropogenic stressors is critically needed if this species is to be considered as a potential restoration management strategy in coral reef environments. We examined the effects of temperature (control: 28°C and elevated: 31°C) and pH (control: 8.0 and reduced pH: 7.7) on the king crab’s larval and early juvenile survival, molt-stage duration, and morphology in a fully crossed laboratory experiment. Survival to the megalopal stage was reduced (13.5% lower) in the combined reduced pH and elevated temperature treatment relative to the control. First-stage (J1) juveniles delayed molting by 1.5 days in the reduced pH treatment, while second-stage (J2) crabs molted 3 days earlier when exposed to elevated temperature. Juvenile morphology did not differ among treatments. These results suggests that juvenile king crabs are tolerant to changes associated with climate change. Given the important role of the king crab as a grazer of macroalgae, its tolerance to climate stressors suggests that it could benefit restoration efforts aimed at making coral reefs more resilient to increasingly warm and acidic oceans into the future.

Abstract:

Coral reefs are vulnerable to global ocean acidification (OA) and local human activities will continue to exacerbate coastal OA. In Bolinao, Philippines, intense unregulated fish mariculture has resulted in regional eutrophication. In order to examine the coastal acidification associated with this activity and the impact on nearby coral reefs, water quality and carbonate chemistry parameters were measured at three reef sites, a mariculture site and an offshore, minimally impacted control site during both the wet and dry season. Additionally, benthic community composition was characterized at reef sites, and both autonomous carbonate chemistry sampling and high-frequency pH measurements were used to characterize fine-scale (diel) temporal variability. Water quality was found to be poorer at all reefs during the wet season, when there was stronger outflow of waters from the mariculture area. Carbonate chemistry parameters differed significantly across the reef flat and between seasons, with more acidic conditions occurring during the dry season and increased primary production suppressing further acidification during the wet season. Significant relationships of both total alkalinity (TA) and dissolved inorganic carbon (DIC) with salinity across all stations may imply outflow of acidified water originating from the mariculture area where pH values as low as 7.78 were measured. This apparent mariculture-induced coastal acidification was likely due to organic matter respiration as sustained mariculture will continue to deliver organic matter. While TA-DIC vector diagrams indicate greater contribution of net primary production, net calcification potential in the nearest reef to mariculture area may already be diminished. The two farther reefs, characterized by higher coral cover, indicates healthier ecosystem functioning. Here we show that unregulated fish mariculture activities can lead to localized acidification and impact reef health. As these conditions at times approximate those projected to occur globally due to OA, our results may provide insight into reef persistence potential worldwide. These results also underscore the importance of coastal acidification and indicate that actions taken to mitigate OA on coral reefs should address not only global CO₂ emissions but also local perturbations, in this case fish mariculture-induced eutrophication.

Abstract:

Ocean acidification (OA) is expected to modify the structure and function of coral reef ecosystems by reducing calcification, increasing bioerosion, and altering the physiology of many marine organisms. Much of our understanding of these relationships is based on experiments with static OA treatments, although evidence suggests that the magnitude of diurnal fluctuations in carbonate chemistry may modulate the calcification response to OA. These light-mediated swings in seawater pH are projected to become more extreme with OA, yet their impact on bioerosion remains unknown. We evaluated the influence of diurnal carbonate chemistry variability on the bioerosion rates of two Caribbean sponges: the zooxanthellate Cliona varians and azooxanthellate Cliothosa delitrix. Replicate fragments from multiple colonies of each species were exposed to four precisely controlled pH treatments: contemporary static (8.05 ± 0.00; mean pH ± diurnal pH oscillation), contemporary variable (8.05 ± 0.10), future OA static (7.80 ± 0.00), and future OA variable (7.80 ± 0.10). Significantly enhanced bioerosion rates, determined using buoyant weight measurements, were observed under more variable conditions in both the contemporary and future OA scenarios for C. varians, whereas the same effect was only apparent under contemporary pH conditions for C. delitrix. These results indicate that variable carbonate chemistry has a stimulating influence on sponge bioerosion, and we hypothesize that bioerosion rates evolve non-linearly as a function of pCO₂ resulting in different magnitudes and directions of rate enhancement/reduction between day and night, even with an equal fluctuation around the mean. This response appeared to be intensified by photosymbionts, evident by the consistently higher percent increase in bioerosion rates for photosynthetic C. varians across all treatments. These findings further suggest that more variable natural ecosystems may presently experience elevated sponge bioerosion rates and that the heightened impact of OA enhanced bioerosion on reef habitat could occur sooner than prior predictions.

Abstract:

Coral reef habitat is created when calcium carbonate production by calcifiers exceeds removal by physical and biological erosion. Carbonate budget surveys provide a means of quantifying the framework-altering actions of diverse assemblages of marine species to determine net carbonate production, a single metric that encapsulates reef habitat persistence. In this study, carbonate budgets were calculated for 723 sites across the Florida Reef Tract (FRT) using benthic cover and parrotfish demographic data from NOAA’s National Coral Reef Monitoring Program, as well as high-resolution LiDAR topobathymetry. Results highlight the erosional state of the majority of the study sites, with a trend towards more vulnerable habitat in the northern FRT, especially in the Southeast Florida region (− 0.51 kg CaCO₃ m⁻² year⁻¹), which is in close proximity to urban centers. Detailed comparison of reef types reveals that mid-channel reefs in the Florida Keys have the highest net carbonate production (0.84 kg CaCO₃ m⁻² year⁻¹) and indicates that these reefs may be hold-outs for reef development throughout the region. This study reports that Florida reefs, specifically their physical structure, are in a net erosional state. As these reefs lose structure, the ecosystem services they provide will be diminished, signifying the importance of increased protections and management efforts to offset these trends.

Abstract:

Stony coral tissue loss disease (SCTLD) was first observed in 2014 near Virginia Key in Miami-Dade County, Florida. Field sampling, lab experiments, and modeling approaches have suggested that reef sediments may play a role in SCTLD transmission, though a positive link has not been tested experimentally. We conducted an ex situ transmission assay using a statistically-independent disease apparatus to test whether reef sediments can transmit SCTLD in the absence of direct contact between diseased and healthy coral tissue. We evaluated two methods of sediment inoculation: batch inoculation of sediments collected from southeast Florida using whole colonies of diseased Montastraea cavernosa, and individual inoculations of sediments following independent, secondary infections of ∼5 cm² coral fragments. Healthy fragments of the coral species Orbicella faveolata and M. cavernosa were exposed to these diseased sediment treatments, as well as direct disease contact and healthy sediment controls. SCTLD transmission was observed for both batch and individual diseased sediment inoculation treatments, albeit with lower proportions of infected individuals as compared to disease contact controls. The time to onset of lesions was significantly different between species and among disease treatments, with the most striking infections occurring in the individual diseased sediment treatment in under 24 h. Following infection, tissue samples were confirmed for the presence of SCTLD signs via histological examination, and sediment subsamples were analyzed for microbial community variation between treatments, identifying 16 SCTLD indicator taxa in sediments associated with corals experiencing tissue loss. This study demonstrated that reef sediments can indeed transmit SCTLD through indirect exposure between diseased and healthy corals, and adds credence to the assertion that SCTLD transmission occurs via an infectious agent or agents. This study emphasizes the critical need to understand the roles that sediment microbial communities and coastal development activities may have on the persistence of SCTLD throughout the endemic zone, especially in the context of management and conservation strategies in Florida and the wider Caribbean. 

Abstract:

Stony coral tissue loss disease (SCTLD) remains an unprecedented epizootic disease, representing a substantial threat to the persistence and health of coral reef ecosystems in the Tropical Western Atlantic since its first observation near Miami, Florida in 2014. In addition to transport between adjacent reefs indicative of waterborne pathogen(s) dispersing on ocean currents, it has spread throughout the Caribbean to geographically- and oceanographically-isolated reefs, in a manner suggestive of ship and ballast water transmission. Here we evaluate the potential for waterborne transmission of SCTLD including via simulated ballast water, and test the efficacy of commonly-used UV radiation treatment of ballast water. Two species of reef-building corals (Orbicella faveolata and Pseudodiploria strigosa) were subjected to (1) disease-exposed or UV-treated disease-exposed water, and (2) a ballast hold time series of disease-exposed water in two carefully-controlled experiments to evaluate transmission. Our experiments demonstrated transmission of SCTLD through water, rather than direct contact between diseased and healthy corals. While UV treatment of disease-exposed water led to a 50% reduction in the number of corals exhibiting disease signs in both species, the statistical risk of transmission and volume of water needed to elicit SCTLD lesions remained similar to untreated disease-exposed water. The ballast hold time (24 h vs. 120 h) did not have a significant effect on the onset of visible disease signs for either species, though there appeared to be some evidence of a concentration effect for P. strigose as lesions were only observed after the 120 h ballast hold time. Results from both experiments suggest that the SCTLD pathogens can persist in both untreated and UV-treated ballast water and remain pathogenic. Ballast water may indeed pose a threat to the continued spread and persistence of SCTLD, warranting further investigation of additional ballast water treatments and pathogen detection methods.

Abstract:

National Oceanic and Atmospheric Administration’s Coral Reef Conservation Program supports the National Coral Reef Monitoring Program (NCRMP) in the United States Pacific, Atlantic, Caribbean, and Gulf of Mexico. NCRMP conducts standardized observations of biological, climatic, and socioeconomic indicators across American Samoa, Guam, the Main Hawaiian Islands, the Northwestern Hawaiian Islands, the Northern Mariana Islands, the Pacific Remote Islands, Florida, the Flower Garden Banks, Puerto Rico, and the United States Virgin Islands. NCRMP provides periodic, national-level assessments of the status of United States coral reef ecosystems and communities connected to them. In 2014, NCRMP partnered with the University of Maryland Center for Environmental Science on an unprecedented collaboration between federal and jurisdictional/state agencies, academia, and non-governmental organizations to synthesize NCRMP data into a reporting format designed to be accessible and relevant to the public and policy makers. The process involved multi-year data analyses of key benthic, fish, and climate indicators. In populated jurisdictions, socioeconomic data were integrated to assess public support for management actions, participation in pro-environmental behaviors, and awareness of threats to coral reefs. Jurisdictions were scored using a report-card scale (0–100%) by establishing references for each indicator using best-available historical data or expert opinion where historical data did not exist or were not statistically comparable. Despite overall ecosystem scores of Fair for all combined Atlantic (70%) and Pacific (74%) jurisdictions, the current trend is downward with a majority of United States coral reefs declining and vulnerable to further degradation. Remote, uninhabited reefs had an advantage with respect to reef fish population scores, i.e., Flower Garden Banks (85%) and Pacific Remote Islands (93%), when compared to populated location scores, i.e., Puerto Rico (63%) and Main Hawaiian Islands (66%). All coral reefs are highly impacted by climate change, and climate impacts were more pronounced than expected on remote reefs, i.e., the Northwestern Hawaiian Islands (58%). Presenting results in a report-card style facilitates communication to the public and policy makers, and provides a useful mechanism to garner support for management actions such as expanding protected areas; enforcing existing regulations; increasing climate change education; reducing land-based sources of pollution; and other actions to improve the trajectory of coral reef ecosystem conditions.

Abstract:

In an era of global change, the fate and form of reef habitats will depend on shifting assemblages of organisms and their responses to multiple stressors. Multiphyletic assemblages of calcifying and bioeroding species contribute to a dynamic balance between constructive and erosive processes, and reef-framework growth occurs only when calcium-carbonate deposition exceeds erosion. Each contributing species exhibits a unique combination of environmental sensitivities, trophic needs, and competitive abilities, making the net outcome of their habitat-altering behavior difficult to predict. In this study, standardized blocks of clean, massive Porites were placed at six reef sites in the eastern tropical Pacific, in the strongly and more-weakly upwelling Gulfs of Panamá (GoP) and Chiriquí (GoC), respectively. Sites were chosen to characterize the unique thermal and carbonate-chemistry conditions of each gulf. Satellite products were used to examine differences in sea-surface productivity, and surveys were conducted to quantify the abundance of important grazing taxa. After two years in situ, the Porites blocks were collected and scanned using high-resolution computed tomography to volumetrically quantify both endolithic and epilithic habitat alteration. Scan-volumes were further classified into functional groups according to morphology to quantify external bioerosion by fish and sea urchins, as well as the calcifying and bioeroding activity of crustose coralline algae, scleractinian corals, mollusks, annelids, and barnacles. The GoP, which has higher productivity, cooler temperatures, and periodically lower pH conditions, had higher rates of macroboring, but also higher rates of calcification. These unexpectedly higher rates of calcification in the GoP were a result of high recruitment of suspension-feeding taxa, particularly barnacles and vermiform fauna that have poor reef-forming potential. External bioerosion by grazers was the dominant process influencing these dead coral substrates across both gulfs, contributing to higher rates of net erosion in the GoC and underscoring the important roles that urchins and fish play in not just removing algae on reefs, but also eroding reef habitat. Ultimately these findings reveal that the trophic requirements of habitat-altering taxa are closely tied to reef-framework stability, and that environmental conditions conducive to carbonate precipitation are not necessarily those that will lead to habitat persistence.

Abstract:

Sampling of environmental DNA (eDNA) in seawater is an increasingly common approach to non-invasively assess marine biodiversity, detect cryptic or invasive species, and monitor specific groups of organisms. Despite this remarkable utility, collection and filtration of eDNA samples in the field still requires considerable time and effort. Recent advancements in automated water samplers have standardized the eDNA collection process, allowing researchers to collect eDNA day or night, sample in locations that are difficult to access, and remove the need for highly trained personnel to perform sampling. However, the high cost of purchasing or building these samplers represents a financial hurdle to widespread application. To overcome this difficulty, we have designed and built a low-cost subsurface automated sampler for eDNA (SASe). Each sampler is submersible to 55 m, can filter a pre-programmable volume of water, and preserves eDNA at the site of collection. SASe samplers have replaceable filters and a low build cost (∼280 USD vs. >100,000 USD for other eDNA samplers), which facilitates repeated field sampling at fine spatial and temporal scales. Lab testing has shown the SASe to be as effective as a standard desktop peristaltic pump for sampling, preserving, and recovering of marine eDNA. SASe design files and operating code are open-source, promoting the use of this tool to meet a range of future eDNA research applications, including project-specific customizations to the current design.

Abstract:

Since the appearance of stony coral tissue loss disease (SCTLD) on reefs off Miami in 2014, this unprecedented outbreak has spread across the entirety of Florida’s coral reef tract, as well as to many territories throughout the Caribbean. The endemic zone reached the upper Florida Keys by 2016, resulting in partial or complete mortality of coral colonies across numerous species. Disease was first observed at Cheeca Rocks (Islamorada, Florida) in the beginning of 2018, with reports of coral mortality peaking mid-year. The disease was still present at Cheeca Rocks as of March 2020, however, to a lesser degree compared to the initial outbreak. Annual monitoring efforts have been ongoing at Cheeca Rocks since 2012, including repeated benthic photomosaics of a 330 m² survey zone, spanning six replicate sites. As such, a repository of coral community composition data exists for before and after the disease outbreak that was analyzed to assess the impacts of SCTLD on reef communities at an upper Florida Keys inshore reef. Cheeca Rocks is hypothesized to be a resilient reef due to its persistent high coral cover despite its inshore location, which subjects corals to fluctuating water quality and marginal environmental conditions. Coral populations here have been shown to recover from bleaching events and heat stress with minimal coral mortality. Though colonies of coral species characterized as highly and moderately susceptible to SCTLD (e.g., Colpophyllia natans, Diploria labyrinthiformis, Pseudodiploria strigosa, Orbicella annularis, and O. faveolata) suffered mortality as a result of the outbreak with an average loss of 16.42% relative cover by species, the overall impacts on coral cover and community structure were relatively low, contributing to a loss of total coral cover of only 1.65%. Comparison of photomosaic data to other studies indicate Cheeca Rocks may not have been affected as severely as other sites on Florida’s coral reef tract, underlying this site’s potential role in coral resilience to stressors including bleaching events, land-based pollution, and disease epizootics.

Abstract:

Coral reefs are globally in decline and western Atlantic reefs have experienced the greatest losses in live coral cover of any region. The Flower Garden Banks (FGB) in the Gulf of Mexico are high-latitude, remote reefs that are an outlier to this trend, as they have maintained coral cover ≥ 50% since at least 1989. Quantifying the long-term trends in coral growth of key reef-building coral species, and the underlying environmental drivers, leads to a better understanding of local sensitivities to past changes that will ultimately allow us to better predict the future of reef growth at FGB. We obtained coral cores and constructed growth records for two of the most abundant hermatypic coral species at FGB, Pseudodiploria strigosa and Orbicella faveolata. Our records cover 57 yrs of growth for P. strigosa (1957–2013) and 45 yrs for O. faveolata (1970–2014). Linear extension and calcification rates of both species have increased significantly, but skeletal density did not change over the respective time periods. Extension and calcification data of both species combined were negatively correlated with the discharge from the Atchafalaya River, but positively correlated with maximum sea surface temperatures (SST). These data provide evidence that runoff from the Atchafalaya River impacts FGB corals and is a major control on coral growth at FGB. The increase in growth at FGB can be attributed to the significant warming trend in maximum monthly SSTs. Given the warming trend and recent increase in severity of bleaching at FGB, the prognosis is that bleaching events will become more deleterious with time, which will lead to a breakdown in the positive relationship between coral growth and maximum SST. This study provides further evidence that some high-latitude, cooler reef sites have experienced a stimulation in coral growth with ocean warming.

Abstract:

Ocean acidification (OA) is impairing the construction of coral reefs while simultaneously accelerating their breakdown. The metabolism of different reef organism assemblages alters seawater pH in different ways, possibly buffering or exacerbating OA impacts. In spite of this, field data relating benthic community structure and seawater pH are sparse. We collected pH time-series data snapshots at 10 m depth from 28 different reefs (n = 13 lagoon, n = 15 fore reef) across 22 Pacific islands, spanning 31° latitude and 90° longitude. Coincident with all deployments, we measured percent cover of the benthic community. On fore reefs, high coral cover (CC) negatively correlated with mean and minimum pH, but positively correlated with pH variability. Conversely, pH minima were positively correlated to coverage of coralline and turf algae. Benthic cover did not correlate with pH in lagoonal reefs. From 0%–100% CC, mean pH and aragonite saturation state (Ωarag) declined −0.081 and −0.51, respectively, while declines in minimum values were greater (Δmin pH = −0.164, Δmin Ωarag = −0.96). Based upon previously published relationships, the mean pH decline from 0%–100% CC would depress coral calcification 7.7%–18.0% and increase biologically-mediated dissolution 13.5%–27.9%, with pH minima depressing dark coral calcification 14.4%–35.2% and increasing biologically-mediated dissolution 31.0%–62.2%. This spatially expansive dataset provides evidence that coral reefs with the highest coral cover may experience the lowest and most extreme pH values with OA.

Abstract:

Although coral reef ecosystems across the globe are in decline due to climate change and other anthropogenic stressors, certain inshore reefs of the Upper Florida Keys reef tract have persisted, with some even thriving, under marginalized conditions. To better understand the molecular basis of the thermotolerance displayed by these corals, a laboratory-based temperature challenge experiment that also featured conspecifics from a more stress-susceptible offshore reef was conducted with the common Caribbean reef-builder Orbicella faveolata, and the proteomes of both the coral hosts and their endosymbiotic dinoflagellate communities were profiled in (1) controls, (2) corals that succumbed to high-temperature stress and bleached, and (3) those that instead acclimated to high temperatures ex situ. Proteomic signatures varied most significantly across temperatures, host genotypes, and Symbiodiniaceae assemblages, and the two eukaryotic compartments of this mutualism exhibited distinct proteomic responses to high temperatures. Both partners maintained high levels of molecular chaperones and other canonical (eukaryotic) stress response (CSR) proteins in all treatments (including controls). Instead, proteins involved in lipid trafficking, metabolism, and photosynthesis played greater roles in the holobionts’ high-temperature responses, and these energy mobilization processes may have sustained the elevated protein turnover rates associated with the constitutively active CSR.

Abstract:

Healthy coral communities can be found on artificial structures (concrete walls and riprap) within the Port of Miami (PoM), Florida. These communities feature an unusually high abundance of brain corals, which have almost entirely vanished from nearby offshore reefs. These corals appear to be thriving in very low-quality waters influenced by dense ship and boat traffic, dredging, and numerous residential and industrial developments. The PoM basin is part of Biscayne Bay, an estuarine environment that experiences frequent freshwater input, high nutrient loading, hypoxia, and acidification. To investigate if there is a molecular basis behind the ability of these corals to persist within these highly “urbanized” waters, we compared whole transcriptome expression profiles from 25 PoM Pseudodiploria strigose colonies against six conspecifics from a nearby offshore reef. We found that the urban corals exhibited higher expression of (1) transcripts encoding pattern-recognition receptors which may allow these corals to better sense and detect food particles and pathogenic invaders, (2) digestive and degradation-associated enzymes, which may suggest an elevated capacity for heterotrophy and pathogen digestion, and (3) transcripts related to innate immunity, defense, and cellular detoxification, which may collectively protect against pathogenic organisms and water pollution impacts. Large ribosomal subunit rRNA gene mapping revealed that P. strigose colonies from the PoM sites predominantly hosted heat-tolerant endosymbionts from the genus Durusdinium, while offshore conspecifics’ communities were dominated by symbionts in the genus Breviolum. These findings reveal transcriptomic plasticity and molecular mechanisms contributing to the persistence of these corals within a highly urbanized habitat.

Abstract:

Coral reefs are one of the most biodiverse and economically important ecosystems in the world, but they are rapidly degrading due to the effects of global climate change and local anthropogenic stressors. Reef scientists are increasingly studying coral reefs that occur in marginal and extreme environments to understand how organisms respond to, and cope with, environmental stress, and to gain insight into how reef organisms may acclimate or adapt to future environmental change. To date, there have been more than 860 publications describing the biology and/or abiotic conditions of marginal and extreme reef environments, most of which were published within the past decade. These include systems characterized by unusually high, low, and/or variable temperatures (intertidal, lagoonal, high-latitude areas, and shallow seas), turbid or urban environments, acidified habitats, and mesophotic depth, and focus on reefs geographically spread throughout most of the tropics. The papers in this special issue of Coral Reefs, entitled Coral Reefs in a Changing World: Insights from Extremes, build on the growing body of literature on these unique and important ecosystems, providing a deeper understanding of the patterns and processes governing life in marginal reef systems, and the implications that these insights may have for the future of tropical coral reefs in our rapidly changing world.

Abstract:

Naturally acidified environments, such as those caused by volcanic CO₂ venting, reveal how complex coral reef ecosystems may respond to future ocean acidification conditions. Few of these sites have been described worldwide, and only a single such site is known from the Caribbean. Herein, we have characterized an area of volcanic acidification at Mayreau Island, St. Vincent and the Grenadines. Despite localized CO₂ enrichment and gas venting, the surrounding area has high hard and soft coral cover, as well as extensive carbonate frameworks. Twice daily extremes in acidification, in some cases leading to undersaturation of aragonite, are correlated with tidal fluctuations and are likely related to water flow. Corals persisting despite this periodic acidification can provide insights into mechanisms of resilience and the importance of natural pH variability on coral reefs.

Abstract:

Ocean acidification (OA) is the process whereby anthropogenic carbon dioxide is absorbed into seawater, resulting in altered carbonate chemistry and a decline in pH. OA will negatively impact numerous marine organisms, altering the structure and function of entire ecosystems. The progression of OA, while faster than has occurred in recent geological history, has been subtle and detection may be complicated by high variability in shallow-water environments. Nevertheless, comprehensive monitoring and characterization is important given the scale and severity of the problem. Presently, technologies used to measure OA in the field are costly and limited by their detection of only one carbonate chemistry parameter, such as pH. Discrete water samples, by contrast, offer a means of measuring multiple components of the carbonate system, including parameters of particular explanatory value (e.g., total alkalinity, dissolved inorganic carbon), for which field-based sensors do not presently exist. Here we describe the design, use, and performance of a low-cost (<$220 USD) Subsurface Automated Sampler (SAS), suitable for the collection of water for carbonate chemistry analysis. Each sampler is field-programmable using a remote control, performs in depths up to 55 m seawater, collects two separately preserved samples, and logs temperature at the time of collection. SASs are designed from the ground up to be open source with respect to physical design and sampling components, electronic hardware, and software. Build instructions, parts lists, and printable 3D files are provided along with code to ultimately lower the cost of OA monitoring, facilitate further research, and encourage application-specific customization.

Abstract:

Approximately 380,000 underway measurements of sea surface salinity, temperature, and carbon dioxide (CO₂) in the Gulf of Mexico (GoM) were compiled from the Surface Ocean CO₂ Atlas (SOCAT) to provide a comprehensive observational analysis of spatiotemporal CO₂ dynamics from 1996 to 2017. An empirical orthogonal function (EOF) was used to derive the main drivers of spatial and temporal variability in the dataset. In open and coastal waters, drivers were identified as a biological component linked to riverine water, and temperature seasonality. Air-sea flux estimates indicate the GoM open (− 0.06 ± 0.45 mol C m⁻² year⁻¹) and coastal (− 0.03 ± 1.83 mol C m⁻² year⁻¹) ocean are approximately neutral in terms of an annual source or sink for atmospheric CO₂. Surface water pCO₂ in the northwest and southeast GoM open ocean is increasing (1.63 ± 0.63 µatm year⁻¹ and 1.70 ± 0.14 µatm year⁻¹, respectively) at rates comparable to those measured at long-term ocean time-series stations. The average annual increase in coastal CO₂ was 3.20 ± 1.47 µatm year^-1 for the northwestern GoM and 2.35 ± 0.82 µatm year⁻¹ for the west Florida Shelf. However, surface CO₂ in the central (coastal and open) GoM, which is influenced by Mississippi and Atchafalaya River outflow, remained fairly stable over this time period.

Abstract:

No abstract.

Abstract:

Seawater carbonate chemistry varies across temporal and spatial scales. Shallow-water environments can exhibit especially dynamic fluctuations as biological and physical processes operate on a smaller water volume relative to open ocean environments. Water was collected on a bi-monthly basis from seven sites off of southeast Florida (Miami-Dade and Broward counties), including four reefs, and three closely-associated inlets. Significant seasonal fluctuations in carbonate chemistry were observed on reef sites, with elevated pCO₂ in the warmer wet season. Inlets demonstrated a more dynamic range, with periodic pulses of acidified water contributing to, on average, more advanced acidification conditions than those found at nearby reefs. Within inlet environments, there was a significant negative correlation between seawater salinity and both total alkalinity (TA) and dissolved inorganic carbon (DIC), which was in contrast to the patterns observed on reefs. Elevated TA and DIC in low salinity waters likely reflect carbonate dissolution as a result of organic matter decomposition. Together, these data highlight the important role that inlets play on shallow-water carbonate chemistry dynamics within southeast Florida waters and underscore the degree to which engineered freshwater systems can contribute to coastal acidification on localized scales.

Abstract:

Anthropogenic activities are increasing ocean temperature and decreasing ocean pH. Some coastal habitats are experiencing increases in organic runoff, which when coupled with a loss of vegetated coastline can accelerate reductions in seawater pH. Marine larvae that hatch in coastal habitats may not have the ability to respond to elevated temperature and changes in seawater pH. This study examined the response of Florida stone crab (Menippe mercenaria) larvae to elevated temperature (30°C control and 32°C treatment) and CO₂-induced reductions in pH (8.05 pH control and 7.80 pH treatment). We determined whether those singular and simultaneous stressors affect larval vertical movement at two developmental stages. Geotactic responses varied between larval stages. The direction and rate of the vertical displacement of larvae were dependent on pH rather than temperature. Stage III larvae swam upwards under ambient pH conditions, but swam downwards at a faster rate under reduced pH. There was no observable change in the directional movement of Stage V larvae. The reversal in orientation by Stage III larvae may limit larval transport in habitats that experience reduced pH and could pose challenges for the northward dispersal of stone crabs as coastal temperatures warm.

Abstract:

Identifying which factors lead to coral bleaching resistance is a priority given the global decline of coral reefs with ocean warming. During the second year of back-to-back bleaching events in the Florida Keys in 2014 and 2015, we characterized key environmental and biological factors associated with bleaching resilience in the threatened reef-building coral Orbicella faveolata. Ten reefs (five inshore, five offshore, 179 corals total) were sampled during bleaching (September 2015) and recovery (May 2016). Corals were genotyped with 2bRAD and profiled for algal symbiont abundance and type. O. faveolata at the inshore sites, despite higher temperatures, demonstrated significantly higher bleaching resistance and better recovery compared to offshore. The thermotolerant Durusdinium trenchii (formerly Symbiondinium trenchii) was the dominant endosymbiont type region-wide during initial (78.0% of corals sampled) and final (77.2%) sampling; >90% of the nonbleached corals were dominated by D. trenchii. 2bRAD host genotyping found no genetic structure among reefs, but inshore sites showed a high level of clonality. While none of the measured environmental parameters were correlated with bleaching, 71% of variation in bleaching resistance and 73% of variation in the proportion of D. trenchii was attributable to differences between genets, highlighting the leading role of genetics in shaping natural bleaching patterns. Notably, D. trenchii was rarely dominant in O. faveolata from the Florida Keys in previous studies, even during bleaching. The region-wide high abundance of D. trenchii was likely driven by repeated bleaching associated with the two warmest years on record for the Florida Keys (2014 and 2015). On inshore reefs in the Upper Florida Keys, O. faveolata was most abundant, had the highest bleaching resistance, and contained the most corals dominated by D. trenchii, illustrating a causal link between heat tolerance and ecosystem resilience with global change.

Abstract:

This 3-year project was designed to assist in providing data for use in the development of nutrient numeric criteria, as required by the Florida Department of Environmental Protection. Researchers with AOML's Ocean Chemistry and Ecosystems Division conducted field work during the first 2 years of the project, followed by the development of various deliverables, including this final report, which describes in detail four separate efforts: (1) water quality cruises; (2) ocean current measurements; and (3) coral assessments; and (4) microbiological assessments.

Abstract:

Worldwide, coral reef ecosystems are experiencing increasing pressure from a variety of anthropogenic perturbations including ocean warming and acidification, increased sedimentation, eutrophication, and overfishing, which could shift reefs to a condition of net calcium carbonate (CaCO₃) dissolution and erosion. Herein, we determine the net calcification potential and the relative balance of net organic carbon metabolism (net community production; NCP) and net inorganic carbon metabolism (net community calcification; NCC) within 23 coral reef locations across the globe. In light of these results, we consider the suitability of using these two metrics developed from total alkalinity (TA) and dissolved inorganic carbon (DIC) measurements collected on different spatio-temporal scales to monitor coral reef biogeochemistry under anthropogenic change. All reefs in this study were net calcifying for the majority of observations as inferred from alkalinity depletion relative to offshore, although occasional observations of net dissolution occurred at most locations. However, reefs with lower net calcification potential (i.e., lower TA depletion) could shift towards net dissolution sooner than reefs with a higher potential. The percent influence of organic carbon fluxes on total changes in DIC (i.e., NCP compared to the sum of NCP and NCC) ranged from 32% to 88% and reflected inherent biogeochemical differences between reefs. Reefs with the largest relative percentage of NCP experienced the largest variability in seawater pH for a given change in DIC, which is directly related to the reefs’ ability to elevate or suppress local pH relative to the open ocean. This work highlights the value of measuring coral reef carbonate chemistry when evaluating their susceptibility to ongoing global environmental change and offers a baseline from which to guide future conservation efforts aimed at preserving these valuable ecosystems.

Abstract:

Ocean acidification (OA) will result in lower calcification rates for numerous marine taxa, including many species of corals which create important reef habitat. Seawater carbonate chemistry fluctuates over cycles ranging from days to seasons, often driven by biological processes such as respiration and photosynthesis. The magnitude of diel fluctuations varies spatially and may become more pronounced in the future due to OA. Due to technical constraints, OA experiments that incorporate diel variability into treatments are few in number. As a result, the degree to which coral reef organisms are influenced by ambient daily carbonate chemistry variability is poorly understood. Here we describe an experiment conducted in a novel seawater system which can independently manipulate carbonate chemistry in 16 separate aquaria, in real time, allowing precise control of the mean and magnitude of pH oscillations while minimizing pseudoreplication. Five genotypes of the threatened Caribbean coral Acropora cervicornis were subjected to a total of five pH treatments, 7.80 ± 0.20, 7.80 ± 0.10, and 7.80 ± 0.00, as well as 8.05 ± 0.10 and 8.05 ± 0.00. Those corals exposed to variable contemporary conditions (8.05 ± 0.10) calcified faster than those in current and future static treatment levels, which did not significantly differ from each other. Variable contemporary pH also resulted in faster growth rates than highly variable future conditions (7.80 ± 0.20), but were not significantly different than future conditions with the same ±0.10 diel pH oscillation. These findings support the importance of incorporating diel variability into OA experiments and suggest that more variable natural ecosystems may yield higher calcification rates for corals.

Abstract:

Annual coral bleaching events, which are predicted to occur as early as the next decade in the Florida Keys, are expected to cause catastrophic coral mortality. Despite this, there is little field data on how Caribbean coral communities respond to annual thermal stress events. At Cheeca Rocks, an inshore patch reef near Islamorada, Florida, the condition of 4234 coral colonies was followed over 2 years of subsequent bleaching in 2014 and 2015, the two hottest summers on record for the Florida Keys. In 2014, this site experienced 7.7 degree heating weeks (DHW) and, as a result, 38.0% of corals bleached and an additional 36.6% were pale or partially bleached. In situ temperatures in summer of 2015 were even warmer, with the site experiencing 9.5 DHW. Despite the increased thermal stress in 2015, only 12.1% of corals were bleached in 2015, which was 3.1 times less than 2014. Partial mortality dropped from 17.6% of surveyed corals to 4.3% between 2014 and 2015, and total colony mortality declined from 3.4 to 1.9% between years. Total colony mortality was low over both years of coral bleaching with 94.7% of colonies surviving from 2014 to 2016. The reduction in bleaching severity and coral mortality associated with a second stronger thermal anomaly provides evidence that the response of Caribbean coral communities to annual bleaching is not strictly temperature dose dependent and that acclimatization responses may be possible even with short recovery periods. Whether the results from Cheeca Rocks represent an aberration or a true resilience potential is the subject of ongoing research.

Abstract:

Greenhouse gas emissions are increasing ocean temperatures and the partial pressure of CO₂ (pCO₂), resulting in more acidic waters. It is presently unknown how elevated temperature and pCO₂ will influence the early life history stages of the majority of marine coastal species. We investigated the combined effect of elevated temperature (30°C control and 32°C treatment) and elevated pCO₂ (450 μatm control and 1100 μatm treatment) on the (i) growth, (ii) survival, (iii) condition, and (iv) morphology of larvae of the commercially important Florida stone crab, Menippe mercenaria. At elevated temperature, larvae exhibited a significantly shorter molt stage, and elevated pCO₂ caused stage-V larvae to delay metamorphosis to post-larvae. On average, elevated pCO₂ resulted in a 37% decrease in survivorship relative to the control; however, the effect of elevated temperature reduced larval survivorship by 71%. Exposure to both elevated temperature and pCO₂ reduced larval survivorship by 80% relative to the control. Despite this, no significant differences were detected in the condition or morphology of stone crab larvae when subjected to elevated temperature and pCO₂ treatments. Although elevated pCO₂ could result in a reduction in larval supply, future increases in seawater temperatures are even more likely to threaten the future sustainability of the stone-crab fishery.

Abstract:

Mesophotic coral ecosystems (MCEs) are deep (>30 m), light-dependent communities that are abundant in many parts of the global ocean. MCEs are potentially connected to shallow reefs via larval exchange and may act as refuges for reef organisms. However, MCE community level recovery after disturbance, and thus, community resilience, are poorly understood components of their capacity as refuges. To assess the potential for disturbance and growth to drive community structure on MCEs with differential biophysical conditions and coral communities, we collected colonies of Orbicella franksi and Porites astreoides and used computerized tomography to quantify calcification. The divergence of coral growth rates in MCEs with different environmental conditions may be species specific; habitat-forming O. franksi have slow and consistent growth rates of ~0.2 cm yr⁻¹ below 30 m, regardless of mesophotic habitat, compared to ~1.0 cm yr⁻¹ in shallow-water habitats. Slow skeletal growth rates in MCEs suggest that rates of recovery from disturbance will likely also be slow. Localized buffering of MCEs from the stressors affecting shallow reefs is therefore crucial to the long-term capacity of these sites to serve as refugia, given that skeletal extension and recovery from disturbance in MCEs will be significantly slower than on shallow reefs.

Abstract:

We report seasonal water column carbonate chemistry data collected over a three-year period (late 2013 to 2016) at Flower Garden Banks National Marine Sanctuary (FGBNMS) located on the subtropical shelf edge of the northwestern Gulf of Mexico. The FGBNMS hosts the northernmost tropical coral species in the contiguous United States, with over 50% living coral cover. Presented here are results from samples of the upper 25 m of the water column collected from September 2013 to November 2016. Additionally, following a localized mortality event likely associated with major continental flooding in summer 2016, water samples from up to ~250 m depth were collected in the broader FGBNMS area on a rapid response cruise to examine the seawater carbonate system. Both surface (alkalinity (TA) and total dissolved inorganic carbon (DIC) vary over small ranges (2391 ± 19 μmol kg⁻¹ and 2060 ± 19 μmol kg⁻¹, respectively) for all times-series samples. Temperature and salinity both played an important role in controlling the surface water carbonate system dynamics, although temperature was the sole significant factor when there was no flooding. The FGBNMS area acted as a sink for atmospheric CO₂ in winter and a CO₂ source in summer, while the time-integrated CO₂ flux is close to zero (−0.14 ± 1.96 mmol-C m⁻² yr⁻¹). Results from three cruises, i.e., the Gulf of Mexico and East Coast Carbon Project (GOMECC-1) in 2007, the rapid response study, and the Gulf of Mexico Ecosystems and Carbon Cruise (GOMECC-3), revealed decreases in both pH and saturation state with respect to aragonite (Ω_arag) in subsurface waters (~100–250 m) over time. These decreases are larger than those observed in other tropical and subtropical waters. Based on reaction stoichiometry, calculated anthropogenic CO₂ contributed 30–41% of the overall DIC increase, while elevated respiration accounted for the rest.

Abstract:

The persistence of coral reef frameworks requires that calcium carbonate (CaCO₃) production by corals and other calcifiers outpaces CaCO₃ loss via physical, chemical, and biological erosion. Coral bleaching causes declines in CaCO₃ production, but this varies with bleaching severity and the species impacted. We conducted census-based CaCO₃ budget surveys using the established ReefBudget approach at Cheeca Rocks, an inshore patch reef in the Florida Keys, annually from 2012 to 2016. This site experienced warm-water bleaching in 2011, 2014, and 2015. In 2017, we obtained cores of the dominant calcifying coral at this site, Orbicella faveolata, to understand how calcification rates were impacted by bleaching and how they affected the reef-wide CaCO₃ budget. Bleaching depressed O. faveolata growth and the decline of this one species led to an overestimation of mean (± std. error) reef-wide CaCO₃ production by + 0.68 (± 0.167) to + 1.11 (± 0.236) kg m⁻² year⁻¹ when using the static ReefBudget coral growth inputs. During non-bleaching years, the ReefBudget inputs slightly underestimated gross production by − 0.10 (± 0.022) to − 0.43 (± 0.100) kg m⁻² year⁻¹. Carbonate production declined after the first year of back-to-back bleaching in 2014, but then increased after 2015 to values greater than the initial surveys in 2012. Cheeca Rocks is an outlier in the Caribbean and Florida Keys in terms of coral cover, carbonate production, and abundance of O. faveolata, which is threatened under the Endangered Species Act. Given the resilience of this site to repeated bleaching events, it may deserve special management attention.

Abstract:

Sea-level rise (SLR) is predicted to elevate water depths above coral reefs and to increase coastal wave exposure as ecological degradation limits vertical reef growth, but projections lack data on interactions between local rates of reef growth and sea level rise. Here we calculate the vertical growth potential of more than 200 tropical western Atlantic and Indian Ocean reefs, and compare these against recent and projected rates of SLR under different Representative Concentration Pathway (RCP) scenarios. Although many reefs retain accretion rates close to recent SLR trends, few will have the capacity to track SLR projections under RCP4.5 scenarios without sustained ecological recovery, and under RCP8.5 scenarios most reefs are predicted to experience mean water depth increases of more than 0.5 m by 2100. Coral cover strongly predicts reef capacity to track SLR, but threshold cover levels that will be necessary to prevent submergence are well above those observed on most reefs. Urgent action is thus needed to mitigate climate, sea-level and future ecological changes in order to limit the magnitude of future reef submergence.

Abstract:

Staghorn coral, Acropora cervicornis, is a threatened species and the primary focus of western Atlantic reef restoration efforts to date. We compared linear extension, calcification rate, and skeletal density of nursery-raised A. cervicornis branches reared for 6 months either on blocks attached to substratum or hanging from PVC trees in the water column. We demonstrate that branches grown on the substratum had significantly higher skeletal density, measured using computerized tomography, and lower linear extension rates compared to water-column fragments. Calcification rates determined with buoyant weighing were not statistically different between the two grow-out methods, but did vary among coral genotypes. Whereas skeletal density and extension rates were plastic traits that depended on grow-out method, calcification rate was conserved. Our results show that the two rearing methods generate the same amount of calcium carbonate skeleton but produce colonies with different skeletal characteristics and suggest that there is genetically-based variability in coral calcification performance.

Abstract:

Coral reefs are dynamic ecosystems known for decades to be endangered due, in large part, to anthropogenic impacts from land-based sources of pollution (LBSP). In this study, we utilized an Illumina-based next-generation sequencing approach to characterize prokaryotic and fungal communities from samples collected off the southeast coast of Florida. Water samples from coastal inlet discharges, oceanic outfalls of municipal wastewater treatment plants, treated wastewater effluent before discharge, open ocean samples, and coral tissue samples (mucus and polyps) were characterized to determine relationships between microbial communities in these matrices and those in reef water and coral tissues. Significant differences in microbial communities were noted among all sample types but varied between sampling area. Contamination from outfalls was found to be the greatest potential source of LBSP influencing native microbial community structure among all reef samples, although pollution from inlets was also noted. Notably, reef water and coral tissue communities were found to be more greatly impacted by LBSP at southern reefs, which also experienced the most degradation during the course of the study. Results of this study provide new insights into how microbial communities from LBSP can impact coral reefs in Southeast Florida and suggest that wastewater outfalls may have a greater influence on the microbial diversity and structure of these reef communities than do contaminants carried in runoff although the influence of runoff and coastal inlet discharge on coral reefs are still substantial.

Abstract:

Corals are acclimatized to populate dynamic habitats that neighbor coral reefs. Habitats such as seagrass beds exhibit broad diel changes in temperature and pH that routinely expose corals to conditions predicted for reefs over the next 50-100 years. However, whether such acclimatization effectively enhances physiological tolerance to, and hence provides refuge against, future climate scenarios remains unknown. Also, whether corals living in low-variance habitats can tolerate present-day high-variance conditions remains untested. We experimentally examined how pH and temperature predicted for the year 2100 affects the growth and physiology of two dominant Caribbean corals (Acropora palmata and Porites astreoides) native to habitats with intrinsically low (outer-reef terrace, LV) and/or high (neighboring seagrass, HV) environmental variance. Under present-day temperature and pH, growth and metabolic rates (calcification, respiration, and photosynthesis) were unchanged for HV versus LV populations. Superimposing future climate scenarios onto the HV and LV conditions did not result in any enhanced tolerance to colonies native to HV. Calcification rates were always lower for elevated temperature and/or reduced pH. Together, these results suggest that seagrass habitats may not serve as refugia against climate change if the magnitude of future temperature and pH changes is equivalent to neighboring reef habitats.

Abstract:

The eastern tropical Pacific (ETP) is an isolated oceanic region exposed to extreme oceanographic conditions, including low salinity, low pH, high temperatures during El Niño, and low temperatures during La Niña and seasonal upwelling. The coral reefs in this region have a relatively limited suite of species compared to other coral reef areas of the world, but much like more diverse reefs the species present interact in complex ways. Here we synthezise the knowledge of taxonomic groups of reef organisms from prokaryotes to vertebrates, including algae, sponges, cnidarians, annelids and other worms, molluscs, crustaceans, echinoderms and fishes. We also present summaries on the biodiversity of associated functional groups and habitats, including (a) reef zooplankton and cryptic fauna, and (b) soft benthic environments, rhodolith beds and mesophotic environments. Several factors that structure the biodiversity of ETP coral reefs are explored, including biological, physical, and chemical controls. ETP coral reefs are relatively simple systems that can be used as models for studying biodiversity and interactions among species. We conclude this review by highlighting pressing research needs, from very basic inventories to more sophisticated studies of cryptic assemblages, and to investigations on the impacts of natural and anthropogenic effects on ETP coral reef biodiversity.

Abstract:

Eastern Pacific reef ecosystems are home to a diverse assemblage of corallivorous fishes and invertebrates. It is therefore not surprising that there is a rich history of research on corallivores in the eastern Pacific. In fact, much of what is known today on the topic of corallivory has built upon studies from the eastern Pacific region. Here we review the progression of our understanding of eastern Pacific corallivory and corallivores. We discuss the behavior and ecology of these specialized consumers, dividing our analysis into the larger conspicuous taxa such as the crown-of-thorns sea star (Acanthaster planci) and the guineafowl puffer (Arothron meleagris), as well as into the smaller cryptic species such as the pustulate egg shell (Jenneria pustulata) and coral crustacean guards (Trapezia spp., Alpheus lottini). The majority of species that consume coral tissues are facultative corallivores, feeding on corals only incidentally. Both the negative and positive interactions of corallivores to their prey/hosts are reviewed. We address detrimental direct consumption of coral and how it can ultimately influence growth form, species distributions, population structure, and the asexual reproduction of corals. We examine the cleaning behavior of some corallivorous species, as well as their territorial tendencies, which may potentially lead to the exclusion of more lethal coral predators. Despite the high diversity of corallivore taxa, no population outbreaks have been observed in the eastern Pacific; coral colony growth rates and reef accretion proceed apace. Finally, we explore the far-reaching implications of the corallivore feeding strategy, touching on the connections that ultimately link coral biomass with higher trophic levels and the rest of the reef ecosystem.

Abstract:

Trophic interactions on eastern Pacific coral reefs are complex and highly dynamic, ever changing due to numerous biological and physical factors. In this chapter, we first address the sources of energy at the base of food webs, i.e., photosynthetic carbon fixation by benthic algae and endosymbiotic zooxanthellae, secondarily derived organic deposits, detritus, and fecal matter, as well as demersal (within reef) and allochthonous plankton food sources. Next we consider consumers, covering the major reef trophic guilds in the eastern Pacific—suspension feeders, deposit and detritus feeders, herbivores, carnivores (predators and carnivorous grazers), as well as scavengers. The diversity and relative abundance of consumer taxa are described and considered in terms of their ecological roles in community processes. The complex interplay of these guilds is examined through food webs constructed for Panama, Cabo Pulmo reef in the Gulf of California, Mexico, and the Floreana Island rocky reef in the Galápagos Islands. Finally, the effects of physical and biotic perturbations on food webs, interactions, indirect effects, and trophic cascades conclude this review.

Abstract:

Experiments have demonstrated that ocean acidification (OA) conditions projected to occur by the end of the century will slow the calcification of numerous coral species and accelerate the biological erosion of reef habitats (bioerosion). Microborers, which bore holes less than 100 μm diameter, are one of the most pervasive agents of bioerosion and are present throughout all calcium carbonate substrates within the reef environment. The response of diverse reef functional groups to OA is known from real-world ecosystems but, to date, our understanding of the relationship between ocean pH and carbonate dissolution by microborers is limited to controlled laboratory experiments. Here we examine the settlement of microborers to pure mineral calcium carbonate substrates (calcite) along a natural pH gradient at a volcanically acidified reef at Maug, Commonwealth of the Northern Mariana Islands (CNMI). Colonization of pioneer microborers was higher in the lower pH waters near the vent field. Depth of microborer penetration was highly variable both among and within sites (4.2–195.5 μm) over the short duration of the study (3 mo.), and no clear relationship to increasing CO₂ was observed. Calculated rates of biogenic dissolution, however, were highest at the two sites closer to the vent and were not significantly different from each other. These data represent the first evidence of OA-enhancement of microboring flora colonization in newly available substrates and provide further evidence that microborers, especially bioeroding chlorophytes, respond positively to low pH. The accelerated breakdown and dissolution of reef framework structures with OA will likely lead to declines in structural complexity and integrity, as well as possible loss of essential habitat.

Abstract:

Ocean acidification (OA) impacts the physiology of diverse marine taxa; among them corals that create complex reef framework structures. Biological processes operating on coral reef frameworks remain largely unknown from naturally high-carbon-dioxide (CO₂) ecosystems. For the first time, we independently quantified the response of multiple functional groups instrumental in the construction and erosion of these frameworks (accretion, macroboring, microboring, and grazing) along natural OA gradients. We deployed blocks of dead coral skeleton for roughly 2 years at two reefs in Papua New Guinea, each experiencing volcanically enriched CO₂, and employed high-resolution micro-computed tomography (micro-CT) to create three-dimensional models of changing skeletal structure. OA conditions were correlated with decreased calcification and increased macroboring, primarily by annelids, representing a group of bioeroders not previously known to respond to OA. Incubation of these blocks, using the alkalinity anomaly methodology, revealed a switch from net calcification to net dissolution at a pH of roughly 7.8, within Intergovernmental Panel on Climate Change's (IPCC) predictions for global ocean waters by the end of the century. Together these data represent the first comprehensive experimental study of bioerosion and calcification from a naturally high-CO₂ reef ecosystem, where the processes of accelerated erosion and depressed calcification have combined to alter the permanence of this essential framework habitat.

Abstract:

Rising anthropogenic carbon dioxide has resulted in a drop in ocean pH, a phenomenon known as ocean acidification (OA). These acidified waters have many ramifications for diverse marine biota, especially those species which precipitate calcium carbonate skeletons. The permanence of coral reef ecosystems is, therefore, closely related to OA stress as habitat-forming corals will exhibit reduced calcification and growth. Relatively little is known concerning the fate of other constituent taxa which may either suffer concomitant declines or be competitively favored in acidified waters. Here, we experimentally (49 d) test the effects of next century predictions for OA (pH = 7.75, pCO₂ = 1081 µatm) vs. near-present-day conditions (pH = 8.01, pCO₂ = 498 µatm) on the common Caribbean octocoral Eunicea flexuosa. We measure linear extension of this octocoral and use a novel technique, high-resolution micro-computed tomography, to measure potential differences in the morphology of calcified internal skeletal structures (sclerites) in a 2 mm apical section of each branch. Despite the use of highly accurate procedures, we found no significant differences between treatments in either the growth of E. flexuosa branches or the structure of their sclerites. Our results suggest a degree of resilience to OA stress and provide evidence that this octocoral species may persist on Caribbean coral reefs, despite global change.

Abstract:

This book documents and examines the state of health of coral reefs in the eastern tropical Pacific region. It touches on the occurrence of coral reefs in the waters of surrounding countries, and it explores their biogeography, biodiversity, and condition relative to the El Niño-Southern Oscillation and human impacts. Additionally contained within is a field that presents information on many of the species presented in the preceding chapters.

Abstract:

Rising anthropogenic CO₂ in the atmosphere is accompanied by an increase in oceanic CO₂ and a concomitant decline in seawater pH. This phenomenon, known as ocean acidification (OA), has been experimentally shown to impact the biology and ecology of numerous animals and plants, most notably those that precipitate calcium carbonate skeletons, such as reef-building corals. Volcanically acidified water at Maug, Commonwealth of the Northern Mariana Islands (CNMI) is equivalent to near-future predictions for what coral reef ecosystems will experience worldwide due to OA. We provide the first chemical and ecological assessment of this unique site and show that acidification-related stress significantly influences the abundance and diversity of coral reef taxa, leading to the often-predicted shift from a coral to an algae-dominated state. This study provides field evidence that acidification can lead to macroalgae dominance on reefs.

Abstract:

The increase in anthropogenic carbon dioxide in seawater, termed ocean acidification (OA), depresses calcification rates of coral and algae, and may contribute toward reef ecosystem degradation. To test how future OA conditions will influence biologically-mediated dissolution (bioerosion) of coral by the common Caribbean boring sponge Pione lampa (de Laubenfels, 1950), we conducted a series of carefully controlled incubations and used changes in total alkalinity (TA) to calculate calcium carbonate dissolution. We present data showing a positive relationship between seawater pCO2 and chemical bioerosion that predict a 99% increase in chemical erosion before the end of the century, more than double the expected decline in coral calcification rate. To examine how OA-enhanced erosion will influence reef ecosystem persistence, we incorporated these and other data into a carbonate budget model of 37 reefs along the Florida Reef Tract (FRT). Our model showed that all FRT reefs had a positive CaCO₃ budget [mean = 8.257 (SE 0.8077) kg m⁻² yr⁻¹] in preindustrial times, whereas approximately 89% of reefs presently exhibit net erosion. Present-day reef-specific calcification would need to increase by 29.4% to compensate for projected end of the century OA-enhancement of total bioerosion. These findings show that OA may accelerate Caribbean and Atlantic coral reef degradation more rapidly than previously predicted

Abstract:

The calcification and extension rates of two species of scleractinian coral (Montastraea cavernosa, Porites astreoides) were measured in corals experimentally transplanted to paired inshore and offshore locations in the Upper, Middle, and Lower Florida Keys from 2010 to 2011. Growth rates were compared with respect to 1) shelf location, 2) species, 3) region, and 4) temperature. Transplanted corals on inshore reefs generally calcified less than those at paired offshore sites, but these differences were only significant in a few cases. This difference in growth is likely because of two thermal stress events that occurred inshore, but not offshore, as growth records from cores of P. astreoides revealed significantly higher extension and calcification inshore from 2001–2013. The core data confirmed that the years 2010–2012 were a period of depressed growth inshore. Calcification and extension rates of the experimental corals were not statistically different between M. cavernosa and P. astreoides within a given site. The only exceptions were that calcification was higher in M. cavernosa at the Middle Keys inshore site. The Middle Florida Keys sites had the lowest rates of calcification, supporting the hypothesis that the influence of Florida Bay waters in this region contributes to poor reef development. Mean calcification rates negatively correlated with metrics of cold stress in M. cavernosa and heat stress in P. astreoides. The lack of a significant correlation between heat stress and mean calcification in M. cavernosa may help explain this species persistence on today's reefs. Maximum calcification and mean extension, however, were negatively correlated with maximum running 30-day mean temperature, showing that the growth of M. cavernosa is not completely insensitive to warm water stress. The ‘weedy’ life-history strategy of P. astreoides may compensate for the sensitivity of calcification rates to heat stress reported here, allowing this species to maintain the stable populations that have been observed throughout Florida and the wider Caribbean.

Abstract:

Coral reefs along the Florida Keys portion of the Florida Reef Tract (FRT) have undergone a dramatic decline since the 1980s. Since the 1997-98 El Niño event, coral cover on offshore reefs of the FRT has been ≤ 5% and continues to decline. Mortality of the framework-constructing coral in the Orbicella (formerly Montastraea) annularis species complex has driven this recent loss in overall coral cover. One exception to this decline occurred on the inshore patch reefs of the Florida Keys, where coral cover has remained relatively high. We examined the growth and calcification of Orbicella faveolata, an ecologically important subspecies of the O. annularis complex, at both an inshore and offshore reef site representing this dichotomy of present-day coral cover. The period examined (2004-2013) encompasses the Caribbean-wide 2005 mass coral bleaching, the 2009-10 catastrophic cold-water bleaching, and a warm-water bleaching event in 2011. Extension and calcification rates were higher inshore every year from 2004-2013 except when there were thermal stress events that solely impacted inshore reefs (2009-10, 2011-12). Inshore growth rates recovered quickly from cold and warm-water stress. These higher calcification rates and their quick recovery after thermal stress are likely important factors in the persistence of high coral cover inshore.

Abstract:

Global climate change threatens coral growth and reef ecosystem health via ocean warming and ocean acidification (OA). Whereas the negative impacts of these stressors are increasingly well-documented, studies identifying pathways to resilience are still poorly understood. Heterotrophy has been shown to help corals experiencing decreases in growth due to either thermal or OA stress; however, the mechanism by which it mitigates these decreases remains unclear. This study tested the ability of coral heterotrophy to mitigate reductions in growth due to climate change stress in the critically endangered Caribbean coral Acropora cervicornis via changes in feeding rate and lipid content. Corals were either fed or unfed and exposed to elevated temperature (30°C), enriched pCO₂ (800 ppm), or both (30°C/800 ppm) as compared to a control (26°C/390 ppm) for 8 weeks. Feeding rate and lipid content both increased in corals experiencing OA vs. present-day conditions, and were significantly correlated. Fed corals were able to maintain ambient growth rates at both elevated temperature and elevated CO₂, while unfed corals experienced significant decreases in growth with respect to fed conspecifics. Our results show for the first time that a threatened coral species can buffer OA-reduced calcification by increasing feeding rates and lipid content.

Abstract:

The effects of light and elevated pCO₂ on the growth and photochemical efficiency of the critically endangered staghorn coral, Acropora cervicornis, were examined experimentally. Corals were subjected to high and low treatments of CO₂ and light in a fully crossed design and monitored using 3D scanning and buoyant weight methodologies. Calcification rates, linear extension, as well as colony surface area and volume of A. cervicornis were highly dependent on light intensity. At pCO₂ levels projected to occur by the end of the century from ocean acidification (OA), A. cervicornis exhibited depressed calcification, but no change in linear extension. Photochemical efficiency (F _v/F _m) was higher at low light, but unaffected by CO₂. Amelioration of OA-depressed calcification under high-light treatments was not observed, and we suggest that the high-light intensity necessary to reach saturation of photosynthesis and calcification in A. cervicornis may limit the effectiveness of this potentially protective mechanism in this species. High CO₂ causes depressed skeletal density, but not linear extension, illustrating that the measurement of extension by itself is inadequate to detect CO₂ impacts. The skeletal integrity of A. cervicornis will be impaired by OA, which may further reduce the resilience of the already diminished populations of this endangered species.

Abstract:

This study examines fluctuations in an eastern Pacific reef fish assemblage as it varies with coral recovery over 30 years. Concurrent fish and coral monitoring were conducted at Uva Island reef, which lies within the boundaries of Coiba National Park, Panama in an area that has received virtually no fishing pressure or watershed development over the past 80 years. Coral and fish monitoring spanned the 1982-83 and 1997-98 El Niño (ENSO) disturbances, anomalous warming events that selectively killed reef-building corals. While no fish mortalities were observed during the 1982-83 El Niño event, live coral cover was reduced to nearly 0% at the study reef. From 1984 to 1990, live coral (Pocillopora spp.) cover was extremely low (< 5%), but demonstrated steady recovery to ~35% by 2010. By quantifying disturbance-related, long-term changes in coral reef resources and relating these to fish trophic group responses, several functional relationships emerged. A total of 63 fish taxa were observed and reef fish density (all taxa combined) remained relatively stable. Multivariate analysis of species abundances revealed strong overlap between seasons and a clustering of community composition in the years following bleaching. Fish species richness increased significantly as live coral cover rose from near 0% to 15-20% then demonstrated a decreasing trend to 35% cover. Benthic invertivores showed a significant parabolic increase in density peaking at about 20% live coral cover. A pattern of decline was apparent for the mixed diet feeders guild as coral cover increased, whereas an asymptotic relationship with coral cover emerged for the facultative corallivore guild. No clear patterns in herbivore, piscivore and planktivore abundance were apparent with increasing coral cover. The varying responses of invertivore, corallivore and mixed diet feeding guilds demonstrated strong associations with coral cover, probably reflecting changes in availability of their respective trophic resources during reef recovery. Thus, variations in coral cover likely influence fish communities through trophic pathways involving invertebrate food sources.

Abstract:

Anthropogenic CO₂ is causing warming and ocean acidification. Coral reefs are being severely impacted, yet confusion lingers regarding how reefs will respond to these stressors over this century. Since the 1982–1983 El Niño–Southern Oscillation warming event, the persistence of reefs around the Galápagos Islands has differed across an acidification gradient. Reefs disappeared where pH  < 8.0 and aragonite saturation state (Ω_arag)  ≤ 3 and have not recovered, whereas one reef has persisted where pH  > 8.0 and Ω_arag  > 3. Where upwelling is greatest, calcification by massive Porites is higher than predicted by a published relationship with temperature despite high CO₂, possibly due to elevated nutrients. However, skeletal P/Ca, a proxy for phosphate exposure, negatively correlates with density (R = −0.822, p < 0.0001). We propose that elevated nutrients have the potential to exacerbate acidification by depressing coral skeletal densities and further increasing bioerosion already accelerated by low pH.

Abstract:

Ocean acidification affects a wide diversity of marine organisms and is of particular concern for vulnerable larval stages critical to population replenishment and connectivity. Whereas it is well known that ocean acidification will negatively affect a range of calcareous taxa, the study of fishes is more limited in both depth of understanding and diversity of study species. We used new 3D microcomputed tomography to conduct in situ analysis of the impact of ocean acidification on otolith (ear stone) size and density of larval cobia (Rachycentron canadum), a large, economically important, pantropical fish species that shares many life history traits with a diversity of high-value, tropical pelagic fishes. We show that 2,100 μatm partial pressure of carbon dioxide (pCO₂) significantly increased not only otolith size (up to 49% greater volume and 58% greater relative mass) but also otolith density (6% higher). Estimated relative mass in 800 μatm pCO₂ treatments was 14% greater, and there was a similar but nonsignificant trend for otolith size. Using a modeling approach, we demonstrate that these changes could affect auditory sensitivity including a ∼50% increase in hearing range at 2,100 μatm pCO₂, which may alter the perception of auditory information by larval cobia in a high-CO₂ ocean. Our results indicate that ocean acidification has a graded effect on cobia otoliths, with the potential to substantially influence the dispersal, survival, and recruitment of a pelagic fish species. These results have important implications for population maintenance/replenishment, connectivity, and conservation efforts for other valuable fish stocks that are already being deleteriously impacted by overfishing.

Abstract:

Ocean acidification is the global decline in seawater pH and calcium carbonate (CaCO₃) saturation state (Ω) due to the uptake of anthropogenic CO₂ by the world's oceans. Acidification impairs CaCO₃ shell and skeleton construction by marine organisms. Coral reefs are particularly vulnerable, as they are constructed by the CaCO₃ skeletons of corals and other calcifiers. We understand relatively little about how coral reefs will respond to ocean acidification in combination with other disturbances, such as tropical cyclones. Seawater carbonate chemistry data collected from two reefs in the Florida Keys before, during, and after Tropical Storm Isaac provide the most thorough data to-date on how tropical cyclones affect the seawater CO₂-system of coral reefs. Tropical Storm Isaac caused both an immediate and prolonged decline in seawater pH. Aragonite saturation state was depressed by 1.0 for a full week after the storm impact. Based on current 'business-as-usual' CO₂ emissions scenarios, we show that tropical cyclones with high rainfall and runoff can cause periods of undersaturation (Ω < 1.0) for high-Mg calcite and aragonite mineral phases at acidification levels before the end of this century. Week-long periods of undersaturation occur for 18 mol% high-Mg calcite after storms by the end of the century. In a high-CO₂ world, CaCO₃ undersaturation of coral reef seawater will occur as a result of even modest tropical cyclones. The expected increase in the strength, frequency, and rainfall of the most severe tropical cyclones with climate change in combination with ocean acidification will negatively impact the structural persistence of coral reefs over this century.

Abstract: Coral reef cryptofauna are a diverse group of metazoan taxa that live within intra- and inter-skeletal voids formed by framework structures. Despite a hypothesized high biomass and numerous trophic roles, they remain uncharacterized relative to exposed reef communities. Motile cryptofauna were sampled from live coral colonies and dead frameworks typifying four successive levels of degradation on an eastern Pacific pocilloporid reef. Abundances and biomass were higher on live versus dead corals habitats. The density of cryptofauna per volume substrate was highest on dead coral frameworks of intermediate degradation, where complex eroded substrates provide abundant shelters. These data have important and far-reaching ramifications for how the diverse multispecies assemblages that are reef ecosystems will respond to anthropogenic stressors such as those associated with climate change. Extreme levels of coral mortality, bioerosion, and habitat destruction will lead to impairment and eventually loss of ecosystem functions.

Abstract:

Coral reefs are declining worldwide as a result of many anthropogenic disturbances. This trend is alarming because coral reefs are hotspots of marine biodiversity and considered the 'rainforests of the sea. As in the rainforest, much of the diversity on a coral reef is cryptic, remaining hidden among the cracks and crevices of structural taxa. Although the cryptofauna make up the majority of a reef's metazoan biodiversity, we know little about their basic ecology or how these communities respond to reef degradation. Emerging research shows that the species richness of the motile cryptofauna is higher among dead (framework) vs. live coral substrates and, surprisingly, increases within successively more eroded reef framework structures, ultimately reaching a maximum in dead coral rubble. Consequently, the paradigm that abundant live coral is the apex of reef diversity needs to be clarified. This provides guarded optimism amidst alarming reports of declines in live coral cover and the impending doom of coral reefs, as motile cryptic biodiversity should persist independent of live coral cover. Granted, the maintenance of this high species richness is contingent on the presence of reef rubble, which will eventually be lost due to physical, chemical, and biological erosion if not replenished by live coral calcification and mortality. The trophic potential of a reef, as inferred from the abundance of cryptic organisms, is highest on live coral. Among dead framework substrates, however, the density of cryptofauna reaches a peak at intermediate levels of degradation. In summary, the response of the motile cryptofauna, and thus a large fraction of the reef's biodiversity, to reef degradation is more complex and nuanced than currently thought; such that species richness may be less sensitive than overall trophic function.

Abstract: Coral reef ecosystems contain exceptionally high concentrations of marine biodiversity, potentially encompassing millions of species. Similar to tropical rainforests and their insects, the majority of reef animal species are small and cryptic, living in the cracks and crevices of structural taxa (trees and corals). Although the cryptofauna make up the majority of a reef's metazoan biodiversity, we know little about their basic ecology. We sampled motile cryptofaunal communities from both live corals and dead carbonate reef framework across a gradient of increasing erosion on a reef in Pacific Panama. A total of 289 Operational Taxonomic Units (OTUs) from six phyla were identified. We used species-accumulation models fitted to individual- and sample-based rarefaction curves, as well as seven nonparametric richness estimators to estimate species richness among the different framework types. All procedures predicted the same trends in species richness across the differing framework types. Estimated species richness was higher in dead framework (261-370 OTUs) than in live coral substrates (112-219 OTUs). Surprisingly, richness increased as framework structure was eroded: coral rubble contained the greatest number of species (227-320 OTUs) and the lowest estimated richness of 47-115 OTUs was found in the zone where the reef framework had the greatest vertical relief. This contradicts the paradigm that abundant live coral indicates the apex of reef diversity.

Abstract: Ocean acidification (OA) is expected to reduce the calcification rates of marine organisms, yet we have little understanding of how OA will manifest within dynamic, real-world systems. Natural CO₂, alkalinity, and salinity gradients can significantly alter local carbonate chemistry, and thereby create a range of susceptibility for different ecosystems to OA. As such, there is a need to characterize this natural variability of seawater carbonate chemistry, especially within coastal ecosystems. Since 2009, carbonate chemistry data have been collected on the Florida Reef Tract (FRT). During periods of heightened productivity, there is a net uptake of total CO₂ (T CO₂) which increases aragonite saturation state (V_arag) values on inshore patch reefs of the upper FRT. These waters can exhibit greater Varag than what has been modeled for the tropical surface ocean during preindustrial times, with mean (6 std. error) V_arag-values in spring = 4.69 (60.101). Conversely, V_arag-values on offshore reefs generally represent oceanic carbonate chemistries consistent with present day tropical surface ocean conditions. This gradient is opposite from what has been reported for other reef environments. We hypothesize this pattern is caused by the photosynthetic uptake of TCO₂ mainly by seagrasses and, to a lesser extent, macroalgae in the inshore waters of the FRT. These inshore reef habitats are therefore potential acidification refugia that are defined not only in a spatial sense, but also in time; coinciding with seasonal productivity dynamics. Coral reefs located within or immediately downstream of seagrass beds may find refuge from OA.

Abstract: Cores of coral reef frameworks along an upwelling gradient in Panama show that reef ecosystems in the tropical eastern Pacific collapsed for 2500 years, representing as much as 40% of their history, beginning about 4000 years ago. The principal cause of this millennial-scale hiatus in reef growth was increased variability of the El Niño-Southern Oscillation (ENSO) and its coupling with the Intertropical Convergence Zone. The hiatus was a Pacific-wide phenomenon with an underlying climatology similar to probable scenarios for the next century. Global climate change is probably driving eastern Pacific reefs toward another regional collapse.

Abstract: Coral reef cryptofauna, which live hidden within reef framework structures, are considered to be the most diverse group of coral reef metazoans. They likely comprise more biomass than all surface fauna, providing important food sources for fishes and playing important roles as predators, herbivores, detritivores, filter feeders, and scavengers. In an era of global change, it is important to determine how these communities are structured across reef habitats as well as to understand how reef framework degradation will impact the cryptofauna and, by extension, ecosystem function. Artificial reef framework (ARF) units were constructed from coral rubble to approximate framework substrates. Forty replicates were subjected to treatments of differing porosity, flow, and coral cover in a fully-crossed ANOVA design. After two months in situ, all motile cryptofauna (>2 mm) were counted, weighed, and identified to the lowest possible level. A total of 11,309 specimens were collected, comprising more than 121 species from six separate phyla. Cryptofaunal abundances and biomass were higher in low porosity crypts and biomass was greater in slow flow environments, highlighting the importance of sheltered low porosity habitats, such as backreef rubble plains. The presence of live coral was not found to have a significant effect on the motile cryptofauna occupying the dead coral framework below it, suggesting a high degree of resilience in how framework-dwelling fauna respond to coral mortality. These data support the assertion that artificial reefs are capable of facilitating the accumulation of a diverse cryptic community, independent of live coral, provided they contain suitably porous crypts.

Abstract:

The reproductive ecology of the zooxanthellate reef coral Pavona clavus was investigated at several sites in Costa Rica, Panama, and the Galapagos Islands (Ecuador) over the period 1985-2009. Pavona clavus displayed stable gonochorism as only five hermaphrodites were found in 590 samples. At four of five locations, sex ratios were skewed toward female dominance; however, at Saboga Island (Panama) male colonies predominated. In Panama, sexual maturity was observed in an estimated eight-year-old female colony, and several colonies of 10-20 years of age demonstrated gametogenesis. Sexual activity was observed at all study sites, but gamete development occurred in only 14-31% of colonies sampled sporadically. Seasonality of gametogenic activity occurred predominantly during the warm/wet season, June to August, at mainland sites (Ca'o Island, Costa Rica, and Gulfs of Chiriqui and Panama, Panama). This pattern was repeated in the Galapagos Islands, but mainly from March to May when seasonally high sea temperatures and rainfall prevailed there. Histological sampling and field observations indicated that spawning was centered around the full moon, most frequently on lunar day 17, and near sunset (1,800 h). Mean fecundity (mature ova cm^-2 live tissue) estimates were significantly different for two sites and ranged from ~1,780 (Saboga Island, Gulf of Panama, seasonally upwelling) to ~4,280 (Uva Island, Gulf of Chiriqui, non-upwelling). Assuming three annual spawning events colony^-1 (August, September, October), extrapolation of minimum and maximum fecundities yield 5,340 and 12,840 ova cm^-2 year^-1. Seasonal, lunar, and diel spawning patterns in nine zooxanthellate species at Uva Island indicate asynchronous coral community spawning.

Abstract: No abstract.