%
% JOURNAL ABBREVIATIONS
%
@STRING{ama        = "Ann. Math."}
@STRING{AMS       = "Amer.\ Meteor.\ Soc."}
@STRING{AGU       = "Amer.\ Geophys.\ Union"}
@STRING{AIP       = "Amer. Inst. Phys."}
@STRING{ADGEO     = "Adv.\ Geosci."}
@STRING{AFM       = "Agric.\ For.\ Meteor."}
@STRING{AM        = "Ann.\ Meteor."}
@STRING{ajm       = "Am. J.  Math."} % American Journal of Mathematics
@STRING{AN        = "Astrophys.\ Norv."}             % Astrophysica Norvegica

@STRING{AO        = "Atmos.-Ocean"}                     % Atmosphere-Ocean, published by Canadian Meteorological Society (CMOS)
@STRING{AR        = "Atmos.\ Res."}                     % Atmospheric Research
@STRING{arfm      = "Annu.\ Rev.\ Fluid Mech."} % Annual Review of Fluid Mechanics

@STRING{AUMET     = "Aust.\ Meteor.\ Mag."}
@STRING{BAMS      = "Bull.\ Amer.\ Meteor.\ Soc."}
@STRING{CAP       = "Contrib.\ Atmos.\ Phys."}
@STRING{CC        = "Climate Change"}      % Climate Change
@STRING{CCH       = "Climatic Change"}                  % Climatic Change
@STRING{ccp       = "Commun. Comput. Phys"}
@STRING{CDYN      = "Clim.\ Dynam."}
@STRING{CHAOS     = "Chaos"}
@STRING{COL       = "Collier's"}
@STRING{CRS       = "Cont.\ Shelf Res."}
@STRING{DAO       = "Dyn.\ Atmos.\ Oceans"}
@STRING{ECO       = "Ecology"}
@STRING{EI        = "Earth Interactions"}
@STRING{fdr = "Fluid Dyn. Res."}
@STRING{GA        = "Geophysica"}                       % Geophysica, published by Geophysical Society of Finland
@STRING{GEOMAG    = "Geophys.\ Mag."}
@STRING{GN        = "Geophys.\ Norv."}                  % Geophysica Norvegica
@STRING{GRL       = "Geophys.\ Res.\ Lett."}
@STRING{GEOINT    = "Geofis.\ Int."} % Geofisica Internacional(Mexican journal vols. 3-5 contained proceedings from a hurricane conference)
@STRING{GEOPUB    = "Geofys.\ Publ."}
@STRING{GPC       = "Global Planet.\ Change"}
@STRING{HP        = "Health Phys."}
@STRING{IAOP      = "Izv.\ Atmos.\ Ocean.\ Phys.\ (Engl.\ Transl.)"}
@STRING{IJC       = "Int.\ J.\ Climatol."}
@STRING{IJNM       = "Int.\ J.\ Numerical Methods."}
@STRING{JAM       = "J.\ Appl.\ Meteor."}     % renamed to name below in 2006
@STRING{JAMC      = "J.\ Appl.\ Meteor.\ Climatol."} % Journal of Applied Meteorology and Climatology (this journal used to be called the Journal of Applied Meteorology before 2006)
@STRING{JAOT      = "J.\ Atmos.\ Oceanic Technol."}
@STRING{jas       = "J.\ Atmos.\ Sci."}
@STRING{jasa      = "J. Acoust. Soc. Am."}
@STRING{JCAM      = "J.\ Climate Appl.\ Meteor."}       % now this is JAMC?
@STRING{JCLI      = "J.\ Climate"}
@STRING{JCR       = "J.\ Coastal Res."}
@STRING{JFM       = "J.\ Fluid\ Mech."}
@STRING{JEM       = "J.\ Eng.\ Math."}                  % Journal of Engineering Mathematics
@STRING{jgr       = "J.\ Geophys.\ Res."}
@STRING{JHM       = "J.\ Hydrometeor."}
@STRING{JMS       = "J.\ Mar.\ Syst."}
@STRING{JM        = "J.\ Meteor."}
@STRING{JMR       = "J.\ Mar.\ Res."}
@STRING{JHE       = "J.\ Hydraulic.\ Engg."}
@STRING{jcp       = "J.\ Computational.\ Phys."}
@STRING{JMSJ      = "J.\ Meteor.\ Soc.\ Japan"}
@STRING{JPO       = "J.\ Phys.\ Oceanogr."}
@STRING{JOCEAN    = "J.\ Oceanogr."}                    % Journal of Oceanography
@STRING{JOSJ      = "J.\ Oceanogr.\ Soc.\ Japan"}
@STRING{JSE       = "J.\ Struct.\ Eng."}        % Journal of Structural Engineering at ASCE
@STRING{jspi       = "J.\ Stat.\ Plan.\ Infer."}        % Journal of Statistical Planning and Inference
@STRING{JTM       = "J.\ Tropical Meteor."}
@STRING{JWEIA     = "J.\ Wind Eng.\ Ind.\ Aerodyn."}
@STRING{MA        = "Meteor.\ Appl."}
@STRING{MAP       = "Meteor.\ Atmos.\ Phys."}
@STRING{METMON    = "Meteor.\ Monogr."}
@STRING{METZEIT   = "Meteor.\ Z."}
@STRING{MWL       = "Mar.\ Wea.\ Log"}
@STRING{MWR       = "Mon.\ Wea.\ Rev."}
@STRING{NAT       = "Nature"}
@STRING{NHR       = "Natural Hazards Rev."}
@STRING{NWD       = "Natl.\ Weather Dig."}
@STRING{OA        = "Oceanol. Aeta"}
@STRING{OCEAN     = "Oceanography"}                     % a quarterly journal of The Oceanography Society
@STRING{PAG       = "Pure Appl.\ Geophys."}
@STRING{PF        = "Phys.\ Fluids"}
@STRING{pd     = "Physica D"}
@STRING{PMG       = "Pap.\ Meteor.\ Geophys."}  % Papers in Meteorology and Geophysics
@STRING{PNAS      = "Proc.\ Natl.\ Acad.\ Sci.\ (USA)"}
@STRING{PRE       = "Phys.\ Rev.\ E"}
@STRING{PRSA      = "Proc.\ Roy.\ Soc.\ A."}
@STRING{PT        = "Phys.\ Today"}
@STRING{PTRS      = "Philos.\ Trans.\ Roy.\ Soc.\ London\ A"}
@STRING{pup = "Princeton University Press"}
@STRING{QJRMS     = "Quart.\ J.\ Roy.\ Meteor.\ Soc."}
@STRING{RGEO      = "Rev. Geophys."}
@STRING{SCI       = "Science"}
@STRING{SOLA      = "SOLA"}                             % Scientific Online Letters on the Atmosphere
@STRING{TAGU      = "Eos, Trans.\ Amer.\ Geophys.\ Union"}
@STRING{t    = "Tellus"}
@STRING{TCFD      = "Theor.\ Comput.\ Fluid Dyn."}
@STRING{WEA       = "Weather"}
@STRING{WW        = "Weatherwise"}
@STRING{WF        = "Wea.\ Forecasting"}
@STRING{WMOB      = "WMO Bull."}
@STRING{om = "Ocean Model."} % Ocean Modelling
@STRING{RG        = "Reviews in Geophysics"}
@STRING{OD        = "Ocean Dynamics"}
@STRING{OS        = "Ocean Science"}
@STRING{ESD-REPORT ="Environment and Sustainable Development Report (ESD)"}
@STRING{CF        = "Combustion and Flame"}
@STRING{CTM       = "Combustion Theory and Modeling"}
@STRING{JSC       = "SIAM J.\ Sci.\Computing"}
@STRING{cup = "Cambridge University Press"}
@STRING{ch = "Chapman \& Hall"}
@STRING{s = "Springer"}
@STRING{e = "Elsevier"}

%%
%%
%% database entry for books
@STRING{d = "Dover"}
@STRING{sv = "Springer-Verlag"}


@BOOK{AbramowitzStegun70,
  author = "M. Abramowitz and I. Stegun",
  year   = 1970,
  title  = "Handbook of Mathematical Functions",
  publisher = d,
  pages = 213
}


@BOOK{Bellman57,
  author = "Richard Bellman",
  title = "Dynamic Programming",
  publisher = pup,
  address = "Princeton {NJ}",
  year = "1957"
}

@ARTICLE{Bleck2002,
  author = "Rainer Bleck",
  title = "An oceanic general circulation model framed in hybrid 
                  isopycnic-{C}artesian coordinates.", 
  journal = om,
  volume = "37",
  pages = "55--88",
  year = "2002"
}

@ARTICLE{CameronMartin1948,
  author = "R. H. Cameron and W. T. Martin", 
  title = "Transformations of {Wiener} Integrals under Translations",
  journal = ama,
  volume = "45",
  number = "2",
  year = "1948",
  pages= "386--396"
}

@article{ChassignetEtAl07,
  author = "E. P. Chassignet and H. E. Hurlburt and O. M. Smedstad 
            and G. R. Halliwell and P. J. Hogan and A. J. Wallcraft 
            and R. Baraille and R. Bleck",
  title ="The {HYCOM (Hybrid Coordinate Ocean Model)} data assimilative
           system",
  journal = JMS,
  volume={65},
  pages = {60--83},
  year = {2007}
}


%*
@article{ContiOHagan2010,
  author = "Stefano Conti and Anthony O'Hagan",
  title = "Bayesian emulation of complex multi-output and dynamic
              computer models",
  journal = jspi,
  volume = "140",
  pages ="640--651",
  year ="2010"
}

@BOOK{Evensen2009,
   author = "Geir Evensen",
   title = "Data Assimilation: The Ensemble Kalman Filter",
   year = "2009",
   publisher = sv,
   address =  "Berlin",
   pages = "286"
}


%*
@BOOK{GilksRichardsonSpiegelhalter96,
  editor = "W. R. Gilks and S. Richardson and D. J. Spiegelhalter",
  title = "Markov Chain Monte Carlo in Practice",
  publisher = ch,
  address = "London",
  pages = "486",
  year = "1996"
}
%*

@BOOK{GriewankCorliss91,
  editor = "Andreas Griewank and George F. Corliss",
  title  = "Automatic Differentiation of Algorithms:  Theory, Implementation,
            and Application", 
  series = "SIAM Proceeding Series",
  publisher = "Society for Industrial and Applied Mathematics",
  address = "Philadelphia",
  year = "1991",
}

%*
@ARTICLE{KnioLeMaitre2006,
  author = "O. M. Knio and O. P. {Le Ma\^ itre}", 
  title = "Uncertainty propagation in {CFD} using polynomial chaos 
           decomposition",
  journal = fdr,
  volume = "38",
  year = "2006",
  pages= "616--640"
}

@ARTICLE{LeMaitreEtAl2002,
  author = "O. P. {Le Ma\^ itre} and Matthew T. Reagan and Habib N. Najm
            and Roger G. Ghanem and Omar M. Knio", 
  title = "Uncertainty propagation in {CFD} using polynomial chaos 
           decomposition",
  journal = jcp,
  volume = "181",
  year = "2002",
  note = "doi:10.1006/jcph.2002.7104",
  pages= "9--44"
}

%*

@ARTICLE{KourafalouEtAl2009,
  author = "Vassiliki H. Kourafalou and Ge Pang and {HeeSook} Kang and
            Patrick J. Hogan and {Ole-Martin} Smedsted and
            Robert H. Weisberg", 
  title = "Evaluation of {Global Ocean Data Assimilation Experiment} products 
           on {South Florida} nested simulations with {Hybrid Coordinate}  
           {Ocean Model}",
  journal = od,
  volume = "59",
  year = "2009",
  pages= "47--66"
}

%*
@BOOK{LeMaitreKnio2010,
  author = "O. P. {Le Ma\^ itre} and O. M. Knio",
  title  = "Spectral Methods for Uncertainty Quantification with
            Applications to Computational Fluid Dynamics", 
  series = "Scientific Computation Series",
  publisher = s,
  address = "Berlin",
  pages = "552",
  year = "2010",
}

@ARTICLE{Lorenz63,
  author = "Lorenz, Edward N.",
  title = "Deterministic non-periodic flows",
  journal = jas,
  volume = "20",
  year = "1963",
  pages= "130--141"
}

@ARTICLE{Najm2009,
  author = "H. N. Najm",
  year = "2009",
  title = "Uncertainty Quantification and Polynomial Chaos Techniques 
           in Computational Fluid Dynamics",
  journal = arfm,
  volume = "41",
  pages ="35--52"
}

@article{PrasadHogan2007,
  author ="T. G. Prasad  and Patrick J. Hogan",
  title = "Upper-ocean response to {Hurricane Ivan} in a 1/25${}^\circ$
             nested {Gulf of Mexico HYCOM}",
  journal = jgr,
  volume = "112",
  pages = "doi:10.1029/2006JC003695",
  year = "2007"
}

@ARTICLE{Wiener38,
  author = "N. Wiener",
  year = "1938",
  title = "The homogenous chaos",
  journal = ajm,
  volume = "60",
  pages ="897--936"
}

@ARTICLE{WitteveenBijl2006,
  author = "J.A.S. Witteveen and H. Bijl", 
  title = "Modeling arbitrary uncertainties using {Gram-Schmidt} polynomial
           chaos",
  journal = "44th AIAA Aerospace Sciences Meeting and Exhibit, Reno, Nevada, 
             AIAA-2006-896",
  year = "2006"
}


@ARTICLE{Xiu2009,
  author = "Dongbin Xiu", 
  title = "Fast numerical methods for stochastic computations:  {A} review",
  journal = ccp,
  volume = "5",
  year = "2009",
  pages= "242--272"
}

@BOOK{Bennett1992,
   author = "A. F. Bennett",
   title = "Inverse Methods in Physical Oceanography",
   series = "Cambridge Monographs on Mechanics and Applied Mathematics",
   year = "1992",
   publisher = cup,
   address =  "Cambridge",
   pages = "368"
}

@BOOK{Bennett2002,
   author = "A. F. Bennett",
   title = "Inverse Modeling of the Ocean and Atmosphere",
   year = "2002",
   publisher = cup,
   address =  "Cambridge",
   pages = "234"
}

@BOOK{Wunsch2006,
   author = "Carl Wunsch",
   title = "Discrete Inverse and State Estimation Problems: With Geophysical Fluid Applications",
   year = "2006",
   publisher = cup,
   address =  "Cambridge",
   pages = "371"
}

@BOOK{KarniadakisGlimm2006,
   editor = "George Em Karniadakis and James Glimm",
   title = "Uncertainty Quantification in Simulation Science",
   note = "(Volume 217 of Journal of Computational Physics)",
   year = "2006",
   publisher = e
}

@ARTICLE{Lermusiaux2006,
   author = "Pierre F. J. Lermusiaux",
   title = "Uncertainty Estimation and Prediction for Interdisciplinary Ocean Dynamics",
   journal = jcp,
   volume = "217",
   pages = "176--199",
   note = "doi:10.1016/j.jcp.2006.02.010",
   year = "2006"
}

@ARTICLE{SapsisLermusiaux2009,
   author = "Themistoklis P. Sapsis and Pierre F. J. Lermusiaux",
   title = "Dynamically orthogonal field equations for continuous stochastic
              dynamical systems",
   journal = pd,
   volume = "238",
   pages = "2347--2360",
   note = "doi:10.1016/j.physd.2009.09.017",
   year = "2009"
}

@ARTICLE{TatangEtAl1997,
   author = "M. A. Tatang and W. Pan and R. G. Prinn and G. J. {McRae}",
   title = "An efficient method for parametric uncertainty analysis of numerical geophysical models",
   journal = jgr,
   volume = "102",
   pages = "21,925--21,932",
   note = "doi:10.1029/97JD01654",
   year = "1997"
}

@ARTICLE{PanEtAl1997,
   author = "W. Pan and M. A.Tatang and G. J. {McRae} and R. G. Prinn",
   title = "Uncertainty analysis of direct radiative forcing by anthropogenic sulfate aerosols",
   journal = jgr,
   volume = "102",
   pages = "21,915--21,924",
   note = "doi:10.1029/97JD01653",
   year = "1997"
}

@ARTICLE{WebsterSokolov2000,
   author = "Webster, Mort D. and Sokolov, Andrei P.",
   title = "A Methodology for Quantifying Uncertainty in Climate Projections",
   journal = CC,  
   publisher = "Springer Netherlands",
   pages = "417--446",
   volume = "46",
   issue = "4",
   note = "doi:10.1023/A:1005685317358",
   year = "2000"
}

@ARTICLE{ShenEvansFinette2010,
   author = "Shen, Colin Y. and Evans, Thomas E. and Finette, Steven",
   title = "Polynomial Chaos Quantification of the Growth of 
            Uncertainty Investigated with a Lorenz Model",
   journal = JAOT,
   volume = "27",
   pages = "1059--1071",
   note = "doi:10.1175/2009JTECHO727.1",
   year = "2010"
}

@ARTICLE{Finette2006,
   author = "Finette, Steven",
   title = "A stochastic representation of environmental uncertainty and 
            its coupling to acoustic wave propagation in ocean waveguides",
   journal = jasa,
   volume = "12", 
   issue = "5",
   pages = "2567--2579",
   year = "2006",
}

@ARTICLE{Lorenz84,
  author = "Lorenz, Edward N.",
  title = "Irregularity:  A fundamental property of the atmosphere",
  journal = t,
  volume = "36A",
  year = "1984",
  pages= "98--110"
}


@ARTICLE{GeCheungKobayashi2008,
  author = "Liang Ge and Kwok Fai Cheung and Marcelo H. Kobayashi",
  title = "Stochastic Solution for Uncertainty Propagation in Nonlinear Shallow-Water Equations",
  journal = jhe,
  volume = "134",
  year = "2008",
  pages= "1732--1743"
}

