2017-11-16 13:42:58,382 INFO quick_setup initializing cachefile dbinfo.txt 2017-11-16 13:42:58,388 INFO quick_setup no dbinfo.txt: initializing 2017-11-16 13:42:58,388 INFO quick_setup fix file is NF1704.gps 2017-11-16 13:42:58,389 INFO quick_setup reflayer: ref_method = refsm 2017-11-16 13:42:58,389 INFO quick_setup reflayer: refuv_source = nav 2017-11-16 13:42:58,389 INFO quick_setup reflayer: refuv_smoothwin = 3 2017-11-16 13:42:58,394 INFO root importing numpy version 1.11.0 2017-11-16 18:42:58,411 INFO root importing matplotlib version 1.5.1 2017-11-16 18:42:58,580 INFO root ===================================================== 2017-11-16 18:42:58,581 INFO root ===================================================== 2017-11-16 18:42:58,581 INFO root command line was: /usr/local/bin/quick_adcp.py --cntfile q_py.cnt 2017-11-16 18:42:58,581 INFO root cwd is /media/sf_sadcp/NF1704/processing/os150nb about to run these steps: - write_clearflags - update_gbin - scandata - avg_and_load - codaseditsetup - setflags - getnav - lst_hdg - plot_headcorr - navsteps - lst_temp - plot_temp - lst_npings - calib - matfiles - adcpsect - refabs - smoothnav - putnav - refplots - codaseditsetup 2017-11-16 18:42:58,587 INFO quick_setup found 271 files using wildcard expansion relative to scan directory wildcard string was: "/home/rsmith/sadcp/NF1704/at_sea_data/NF1704_merged/raw/os150/*.raw" 2017-11-16 18:42:58,677 INFO root --------------------------------------------- 2017-11-16 18:42:58,677 INFO root step 1: set up files in "edit" directory 2017-11-16 18:42:58,682 INFO quick_run ... wrote edit/clearflags.tmp 2017-11-16 18:42:58,682 INFO root --------------------------------------------- 2017-11-16 18:42:58,682 INFO root step 2: generate gbins 2017-11-16 18:43:23,264 INFO root --------------------------------------------- 2017-11-16 18:43:23,265 INFO root step 3: scan files for time range 2017-11-16 18:43:24,085 INFO root looking for database with adcpdb/NF1704*.blk 2017-11-16 18:43:24,086 INFO root no database found: starting from scratch 2017-11-16 18:43:24,086 INFO root --------------------------------------------- 2017-11-16 18:43:24,086 INFO root step 4: generate averaged data... 2017-11-16 18:43:24,094 INFO quick_run ... made file load/ping_editparams.txt 2017-11-16 18:43:24,748 INFO pingavg ---------------- 2017-11-16 18:43:24,748 INFO pingavg sonar is os150nb 2017-11-16 18:43:24,749 INFO pingavg Pingavg.run for time range 126.578482 to 152.630480 2017-11-16 18:43:24,749 INFO pingavg transducer offset: xducer_dx = 0.000, xducer_dy = 0.000 2017-11-16 18:43:24,749 INFO pingavg shifted positions applied to *.gpst2 and *.uvship' 2017-11-16 18:43:24,749 INFO pingavg ---------------- 2017-11-16 18:43:32,782 INFO pingavg ./ens_blk001.cmd 2017/05/07 13:58:00 2017/05/08 02:11:56 126.58194 127.09162 2017-11-16 18:43:48,685 INFO pingavg ./ens_blk002.cmd 2017/05/08 18:57:51 2017/05/09 19:52:51 127.79018 128.82837 2017-11-16 18:44:02,730 INFO pingavg ./ens_blk003.cmd 2017/05/09 19:57:50 2017/05/10 20:52:51 128.83183 129.87003 2017-11-16 18:44:16,949 INFO pingavg ./ens_blk004.cmd 2017/05/10 20:57:50 2017/05/11 21:52:50 129.87349 130.91169 2017-11-16 18:44:31,981 INFO pingavg ./ens_blk005.cmd 2017/05/11 21:57:52 2017/05/12 22:52:50 130.91518 131.95336 2017-11-16 18:44:46,795 INFO pingavg ./ens_blk006.cmd 2017/05/12 22:57:51 2017/05/13 23:52:50 131.95684 132.99502 2017-11-16 18:45:01,681 INFO pingavg ./ens_blk007.cmd 2017/05/13 23:57:51 2017/05/15 00:52:51 132.99850 134.03670 2017-11-16 18:45:24,082 INFO pingavg ./ens_blk008.cmd 2017/05/15 00:57:52 2017/05/16 01:52:51 134.04018 135.07837 2017-11-16 18:45:43,027 INFO pingavg ./ens_blk009.cmd 2017/05/16 01:57:50 2017/05/17 02:52:51 135.08183 136.12004 2017-11-16 18:46:01,798 INFO pingavg ./ens_blk010.cmd 2017/05/17 02:57:50 2017/05/18 03:52:52 136.12350 137.16171 2017-11-16 18:46:19,955 INFO pingavg ./ens_blk011.cmd 2017/05/18 03:57:52 2017/05/19 04:52:50 137.16519 138.20336 2017-11-16 18:46:28,266 INFO pingavg ./ens_blk012.cmd 2017/05/19 04:57:52 2017/05/19 16:45:57 138.20685 138.69857 2017-11-16 18:46:48,796 INFO pingavg ./ens_blk013.cmd 2017/05/22 19:28:25 2017/05/23 20:23:26 141.81140 142.84960 2017-11-16 18:47:05,678 INFO pingavg ./ens_blk014.cmd 2017/05/23 20:28:25 2017/05/24 21:23:26 142.85307 143.89127 2017-11-16 18:47:23,344 INFO pingavg ./ens_blk015.cmd 2017/05/24 21:28:25 2017/05/25 22:23:25 143.89473 144.93292 2017-11-16 18:47:44,253 INFO pingavg ./ens_blk016.cmd 2017/05/25 22:28:26 2017/05/26 23:23:26 144.93641 145.97460 2017-11-16 18:48:00,845 INFO pingavg ./ens_blk017.cmd 2017/05/26 23:28:25 2017/05/28 00:23:26 145.97807 147.01627 2017-11-16 18:48:16,899 INFO pingavg ./ens_blk018.cmd 2017/05/28 00:28:25 2017/05/29 01:23:24 147.01974 148.05792 2017-11-16 18:48:32,815 INFO pingavg ./ens_blk019.cmd 2017/05/29 01:28:25 2017/05/30 02:23:26 148.06140 149.09960 2017-11-16 18:48:48,411 INFO pingavg ./ens_blk020.cmd 2017/05/30 02:28:25 2017/05/31 03:23:25 149.10307 150.14126 2017-11-16 18:49:04,124 INFO pingavg ./ens_blk021.cmd 2017/05/31 03:28:26 2017/06/01 04:23:26 150.14475 151.18294 2017-11-16 18:49:23,184 INFO pingavg ./ens_blk022.cmd 2017/06/01 04:28:25 2017/06/02 05:23:26 151.18640 152.22461 2017-11-16 18:49:30,421 INFO pingavg ./ens_blk023.cmd 2017/06/02 05:28:25 2017/06/02 15:03:25 152.22807 152.62737 2017-11-16 18:49:30,468 INFO pingavg batch 152.62391836 152.62739058 115 22 nf2017_152_50400 2017-11-16 18:49:30,468 INFO pingavg Wrote bin, cmd for 6407 ensembles in 23 files. 366 seconds 2017-11-16 18:49:30,506 INFO root --------------------------------------------- 2017-11-16 18:49:30,506 INFO root step 5: load averaged data (to database) 2017-11-16 18:49:32,400 INFO quick_run 24 block files present 2017-11-16 18:49:32,575 INFO root database time range: 2017-11-16 18:49:32,576 INFO root 2017/05/07 13:58:00 to 2017/06/02 15:03:25 2017-11-16 18:49:32,576 INFO root (126.581944 to 152.627373) 2017-11-16 18:49:33,122 INFO root --------------------------------------------- 2017-11-16 18:49:33,122 INFO root step 6: set up files for codas editing (gautoedit.py) 2017-11-16 18:49:33,126 INFO quick_run ... wrote edit/codas_editparams.txt 2017-11-16 18:49:33,126 INFO root --------------------------------------------- 2017-11-16 18:49:33,127 INFO root step 7: run setflags? 2017-11-16 18:49:34,234 INFO root --------------------------------------------- 2017-11-16 18:49:34,235 INFO root step 8: get navigation 2017-11-16 18:49:34,291 INFO quick_subs navigation file nav/NF1704.gps created from load/*.gps2 2017-11-16 18:49:34,342 INFO quick_subs navigation file nav/NF1704.agt created from load/*.gpst2 2017-11-16 18:49:34,882 INFO quick_run plotted uvship 2017-11-16 18:49:34,882 INFO root --------------------------------------------- 2017-11-16 18:49:34,882 INFO root step 9: list heading 2017-11-16 18:49:35,216 INFO quick_run ... headings extracted 2017-11-16 18:49:35,216 INFO root --------------------------------------------- 2017-11-16 18:49:35,216 INFO root step 10: plot heading correction 2017-11-16 18:49:37,459 INFO quick_run plots are in cal/rotate/*png 2017-11-16 18:49:37,460 INFO root ------------------------- 2017-11-16 18:49:37,460 INFO root ---- running navsteps --- 2017-11-16 18:49:37,460 INFO root ------------------------- 2017-11-16 18:49:37,460 INFO root step 11: nav steps: run adcpsect 2017-11-16 18:49:37,460 INFO root navstep 1 2017-11-16 18:49:38,194 INFO quick_run ... ran adcpsect for navsteps 2017-11-16 18:49:38,195 INFO root ------------------------- 2017-11-16 18:49:38,195 INFO root step 12: nav steps: run refabs 2017-11-16 18:49:38,195 INFO root navstep 2 2017-11-16 18:49:38,284 INFO quick_run ... ran refabs for navsteps 2017-11-16 18:49:38,285 INFO root ------------------------- 2017-11-16 18:49:38,285 INFO root step 13: nav steps: run smoothr for plots 2017-11-16 18:49:38,285 INFO root navstep 3 2017-11-16 18:49:40,937 INFO quick_run ... ran smoothr 2017-11-16 18:49:40,937 INFO root ------------------------- 2017-11-16 18:49:40,937 INFO root step 14: nav steps: smooth navigation for velocities 2017-11-16 18:49:40,938 INFO root navstep 4 2017-11-16 18:49:40,938 INFO quick_run smoothing method for ship speed: refsm 2017-11-16 18:49:40,938 INFO quick_run smoothing window: 3 2017-11-16 18:49:40,938 INFO quick_run ship speed source: nav 2017-11-16 18:49:43,213 INFO quick_run ... shipspeed smoothing step done 2017-11-16 18:49:43,214 INFO root ------------------------- 2017-11-16 18:49:43,214 INFO root step 15: nav steps: put positions and uvship from refsm into codasdb 2017-11-16 18:49:43,214 INFO root navstep 5 2017-11-16 18:49:44,110 INFO quick_run ... ran put_txy 2017-11-16 18:49:44,818 INFO quick_run ... ran put_tuv 2017-11-16 18:49:45,126 INFO quick_run ... made navigation plot 2017-11-16 18:49:45,126 INFO root ------------------------- 2017-11-16 18:49:45,127 INFO root step 16: nav steps: make reflayer plots 2017-11-16 18:49:45,127 INFO root navstep 6 2017-11-16 18:49:49,714 INFO quick_run ... made reflayer plots 2017-11-16 18:49:49,714 INFO root --------------------------------------------- 2017-11-16 18:49:49,714 INFO root step 11: run calibration steps 2017-11-16 18:49:49,950 INFO quick_run ...bottom track info in check cal/botmtrk 2017-11-16 18:49:50,851 INFO quick_run ... watertrack info in cal/watertrk 2017-11-16 18:49:53,823 INFO quick_run ... check cal/watertrk for estimate 2017-11-16 18:49:53,824 INFO root --------------------------------------------- 2017-11-16 18:49:53,824 INFO root step 12: extract and plot temperature 2017-11-16 18:49:54,619 INFO quick_run plotted temperature 2017-11-16 18:49:54,620 INFO root --------------------------------------------- 2017-11-16 18:49:54,620 INFO root step 13: extract and plot number of pings per ensemble 2017-11-16 18:49:55,462 INFO quick_run ... plotted number of pings per ensemble 2017-11-16 18:49:55,463 INFO root --------------------------------------------- 2017-11-16 18:49:55,463 INFO root step 14: extract matlab "allbins" 2017-11-16 18:50:00,192 INFO root --------------------------------------------- 2017-11-16 18:50:00,192 INFO root writing "cruise_info.txt" 2017-11-16 17:36:26,558 INFO quick_setup found dbinfo.txt: use values if otherwise unspecified 2017-11-16 17:36:26,561 INFO quick_setup fix file is NF1704.gps 2017-11-16 17:36:26,563 INFO quick_setup reflayer: ref_method = refsm 2017-11-16 17:36:26,563 INFO quick_setup reflayer: refuv_source = nav 2017-11-16 17:36:26,564 INFO quick_setup reflayer: refuv_smoothwin = 3 2017-11-16 17:36:26,573 INFO root importing numpy version 1.11.0 2017-11-16 22:36:26,593 INFO root importing matplotlib version 1.5.1 2017-11-16 22:36:26,783 INFO root found steps2rerun: navsteps:calib 2017-11-16 22:36:26,784 INFO root ===================================================== 2017-11-16 22:36:26,786 INFO root =========== new run: steps2rerun==================== 2017-11-16 22:36:26,788 INFO root ===================================================== 2017-11-16 22:36:26,789 INFO root command line was: /usr/local/bin/quick_adcp.py --steps2rerun navsteps:calib --auto 2017-11-16 22:36:26,790 INFO root cwd is /media/sf_sadcp/NF1704/processing/os150nb about to run these steps: - navsteps - calib - adcpsect - refabs - smoothnav - putnav - refplots - codaseditsetup 2017-11-16 22:36:26,808 INFO root looking for database with adcpdb/NF1704*.blk 2017-11-16 22:36:26,812 INFO root database found: listing blocks 2017-11-16 22:36:27,302 INFO root database time range: 2017-11-16 22:36:27,303 INFO root 2017/05/07 13:58:00 to 2017/06/02 15:03:25 2017-11-16 22:36:27,303 INFO root (126.581944 to 152.627373) 2017-11-16 22:36:27,877 INFO root --------------------------------------------- 2017-11-16 22:36:27,877 INFO root step 1: set up files for codas editing (gautoedit.py) 2017-11-16 22:36:27,878 INFO root --------------------------------------------- 2017-11-16 22:36:27,878 INFO root step 2: run all navsteps 2017-11-16 22:36:27,878 INFO root ------------------------- 2017-11-16 22:36:27,878 INFO root ---- running navsteps --- 2017-11-16 22:36:27,878 INFO root ------------------------- 2017-11-16 22:36:27,879 INFO root step 3: adjust GPS sensor location 2017-11-16 22:36:27,879 INFO root navstep 1 2017-11-16 22:36:28,017 INFO root ------------------------- 2017-11-16 22:36:28,018 INFO root step 4: nav steps: run adcpsect 2017-11-16 22:36:28,018 INFO root navstep 2 2017-11-16 22:36:28,863 INFO quick_run ... ran adcpsect for navsteps 2017-11-16 22:36:28,863 INFO root ------------------------- 2017-11-16 22:36:28,863 INFO root step 5: nav steps: run refabs 2017-11-16 22:36:28,863 INFO root navstep 3 2017-11-16 22:36:28,953 INFO quick_run ... ran refabs for navsteps 2017-11-16 22:36:28,954 INFO root ------------------------- 2017-11-16 22:36:28,954 INFO root step 6: nav steps: run smoothr for plots 2017-11-16 22:36:28,954 INFO root navstep 4 2017-11-16 22:36:31,834 INFO quick_run ... ran smoothr 2017-11-16 22:36:31,835 INFO root ------------------------- 2017-11-16 22:36:31,835 INFO root step 7: nav steps: smooth navigation for velocities 2017-11-16 22:36:31,835 INFO root navstep 5 2017-11-16 22:36:31,836 INFO quick_run smoothing method for ship speed: refsm 2017-11-16 22:36:31,836 INFO quick_run smoothing window: 3 2017-11-16 22:36:31,837 INFO quick_run ship speed source: nav 2017-11-16 22:36:34,224 INFO quick_run ... shipspeed smoothing step done 2017-11-16 22:36:34,225 INFO root ------------------------- 2017-11-16 22:36:34,225 INFO root step 8: nav steps: put positions and uvship from refsm into codasdb 2017-11-16 22:36:34,226 INFO root navstep 6 2017-11-16 22:36:35,206 INFO quick_run ... ran put_txy 2017-11-16 22:36:35,882 INFO quick_run ... ran put_tuv 2017-11-16 22:36:36,209 INFO quick_run ... made navigation plot 2017-11-16 22:36:36,209 INFO root ------------------------- 2017-11-16 22:36:36,209 INFO root step 9: nav steps: make reflayer plots 2017-11-16 22:36:36,209 INFO root navstep 7 2017-11-16 22:36:39,912 INFO quick_run ... made reflayer plots 2017-11-16 22:36:39,912 INFO root --------------------------------------------- 2017-11-16 22:36:39,912 INFO root step 3: run calibration steps 2017-11-16 22:36:40,169 INFO quick_run ...bottom track info in check cal/botmtrk 2017-11-16 22:36:40,993 INFO quick_run ... watertrack info in cal/watertrk 2017-11-16 22:36:43,972 INFO quick_run ... check cal/watertrk for estimate 2017-11-16 17:39:28,470 INFO quick_setup found dbinfo.txt: use values if otherwise unspecified 2017-11-16 17:39:28,472 INFO quick_setup fix file is NF1704.gps 2017-11-16 17:39:28,473 INFO quick_setup reflayer: ref_method = refsm 2017-11-16 17:39:28,473 INFO quick_setup reflayer: refuv_source = nav 2017-11-16 17:39:28,473 INFO quick_setup reflayer: refuv_smoothwin = 3 2017-11-16 17:39:28,480 INFO root importing numpy version 1.11.0 2017-11-16 22:39:28,489 INFO root importing matplotlib version 1.5.1 2017-11-16 22:39:28,672 INFO root found steps2rerun: rotate:navsteps:calib 2017-11-16 22:39:28,673 INFO root ===================================================== 2017-11-16 22:39:28,673 INFO root =========== new run: steps2rerun==================== 2017-11-16 22:39:28,673 INFO root ===================================================== 2017-11-16 22:39:28,673 INFO root command line was: /usr/local/bin/quick_adcp.py --cntfile qrot_py.cnt 2017-11-16 22:39:28,673 INFO root cwd is /media/sf_sadcp/NF1704/processing/os150nb about to run these steps: - rotate - navsteps - calib - adcpsect - refabs - smoothnav - putnav - refplots - codaseditsetup 2017-11-16 22:39:28,679 INFO root looking for database with adcpdb/NF1704*.blk 2017-11-16 22:39:28,680 INFO root database found: listing blocks 2017-11-16 22:39:29,096 INFO root database time range: 2017-11-16 22:39:29,096 INFO root 2017/05/07 13:58:00 to 2017/06/02 15:03:25 2017-11-16 22:39:29,097 INFO root (126.581944 to 152.627373) 2017-11-16 22:39:29,687 INFO root --------------------------------------------- 2017-11-16 22:39:29,687 INFO root step 1: set up files for codas editing (gautoedit.py) 2017-11-16 22:39:29,687 INFO root --------------------------------------------- 2017-11-16 22:39:29,688 INFO root step 2: rotate velocities 2017-11-16 22:39:29,689 INFO quick_subs 2017/06/02 15:04:00 2017-11-16 22:39:29,689 INFO quick_subs last rotate dday 2017-11-16 22:39:29,690 INFO quick_subs 152.627777778 2017-11-16 22:39:29,690 INFO quick_subs first database dday 2017-11-16 22:39:29,690 INFO quick_subs 126.581944444 2017-11-16 22:39:31,991 INFO root --------------------------------------------- 2017-11-16 22:39:31,992 INFO root step 3: run all navsteps 2017-11-16 22:39:31,992 INFO root ------------------------- 2017-11-16 22:39:31,992 INFO root ---- running navsteps --- 2017-11-16 22:39:31,992 INFO root ------------------------- 2017-11-16 22:39:31,992 INFO root step 4: adjust GPS sensor location 2017-11-16 22:39:31,992 INFO root navstep 1 2017-11-16 22:39:32,116 INFO root ------------------------- 2017-11-16 22:39:32,116 INFO root step 5: nav steps: run adcpsect 2017-11-16 22:39:32,116 INFO root navstep 2 2017-11-16 22:39:32,916 INFO quick_run ... ran adcpsect for navsteps 2017-11-16 22:39:32,916 INFO root ------------------------- 2017-11-16 22:39:32,917 INFO root step 6: nav steps: run refabs 2017-11-16 22:39:32,917 INFO root navstep 3 2017-11-16 22:39:33,004 INFO quick_run ... ran refabs for navsteps 2017-11-16 22:39:33,005 INFO root ------------------------- 2017-11-16 22:39:33,005 INFO root step 7: nav steps: run smoothr for plots 2017-11-16 22:39:33,005 INFO root navstep 4 2017-11-16 22:39:35,763 INFO quick_run ... ran smoothr 2017-11-16 22:39:35,764 INFO root ------------------------- 2017-11-16 22:39:35,764 INFO root step 8: nav steps: smooth navigation for velocities 2017-11-16 22:39:35,764 INFO root navstep 5 2017-11-16 22:39:35,764 INFO quick_run smoothing method for ship speed: refsm 2017-11-16 22:39:35,764 INFO quick_run smoothing window: 3 2017-11-16 22:39:35,764 INFO quick_run ship speed source: nav 2017-11-16 22:39:38,041 INFO quick_run ... shipspeed smoothing step done 2017-11-16 22:39:38,041 INFO root ------------------------- 2017-11-16 22:39:38,042 INFO root step 9: nav steps: put positions and uvship from refsm into codasdb 2017-11-16 22:39:38,042 INFO root navstep 6 2017-11-16 22:39:39,002 INFO quick_run ... ran put_txy 2017-11-16 22:39:39,691 INFO quick_run ... ran put_tuv 2017-11-16 22:39:40,007 INFO quick_run ... made navigation plot 2017-11-16 22:39:40,008 INFO root ------------------------- 2017-11-16 22:39:40,008 INFO root step 10: nav steps: make reflayer plots 2017-11-16 22:39:40,008 INFO root navstep 7 2017-11-16 22:39:43,689 INFO quick_run ... made reflayer plots 2017-11-16 22:39:43,689 INFO root --------------------------------------------- 2017-11-16 22:39:43,689 INFO root step 4: run calibration steps 2017-11-16 22:39:43,952 INFO quick_run ...bottom track info in check cal/botmtrk 2017-11-16 22:39:44,823 INFO quick_run ... watertrack info in cal/watertrk 2017-11-16 22:39:47,608 INFO quick_run ... check cal/watertrk for estimate 2017-11-27 16:54:08,026 INFO quick_setup found dbinfo.txt: use values if otherwise unspecified 2017-11-27 16:54:08,028 INFO quick_setup fix file is NF1704.gps 2017-11-27 16:54:08,028 INFO quick_setup reflayer: ref_method = refsm 2017-11-27 16:54:08,028 INFO quick_setup reflayer: refuv_source = nav 2017-11-27 16:54:08,028 INFO quick_setup reflayer: refuv_smoothwin = 3 2017-11-27 16:54:08,035 INFO root importing numpy version 1.11.0 2017-11-27 21:54:08,045 INFO root importing matplotlib version 1.5.1 2017-11-27 21:54:08,224 INFO root found steps2rerun: apply_edit:navsteps:calib 2017-11-27 21:54:08,225 INFO root ===================================================== 2017-11-27 21:54:08,225 INFO root =========== new run: steps2rerun==================== 2017-11-27 21:54:08,225 INFO root ===================================================== 2017-11-27 21:54:08,225 INFO root command line was: /usr/local/bin/quick_adcp.py --cntfile qedit_py.cnt 2017-11-27 21:54:08,225 INFO root cwd is /media/sf_sadcp/NF1704/processing/os150nb about to run these steps: - apply_edit - navsteps - calib - adcpsect - refabs - smoothnav - putnav - refplots - codaseditsetup 2017-11-27 21:54:08,234 INFO root looking for database with adcpdb/NF1704*.blk 2017-11-27 21:54:08,236 INFO root database found: listing blocks 2017-11-27 21:54:08,520 INFO root database time range: 2017-11-27 21:54:08,520 INFO root 2017/05/07 13:58:00 to 2017/06/02 15:03:25 2017-11-27 21:54:08,521 INFO root (126.581944 to 152.627373) 2017-11-27 21:54:09,449 INFO root --------------------------------------------- 2017-11-27 21:54:09,449 INFO root step 1: set up files for codas editing (gautoedit.py) 2017-11-27 21:54:09,449 INFO root --------------------------------------------- 2017-11-27 21:54:09,450 INFO root step 2: apply editing 2017-11-27 21:54:10,579 INFO root --------------------------------------------- 2017-11-27 21:54:10,579 INFO root step 3: run all navsteps 2017-11-27 21:54:10,579 INFO root ------------------------- 2017-11-27 21:54:10,579 INFO root ---- running navsteps --- 2017-11-27 21:54:10,580 INFO root ------------------------- 2017-11-27 21:54:10,580 INFO root step 4: adjust GPS sensor location 2017-11-27 21:54:10,580 INFO root navstep 1 2017-11-27 21:54:10,716 INFO root ------------------------- 2017-11-27 21:54:10,716 INFO root step 5: nav steps: run adcpsect 2017-11-27 21:54:10,716 INFO root navstep 2 2017-11-27 21:54:11,472 INFO quick_run ... ran adcpsect for navsteps 2017-11-27 21:54:11,473 INFO root ------------------------- 2017-11-27 21:54:11,473 INFO root step 6: nav steps: run refabs 2017-11-27 21:54:11,473 INFO root navstep 3 2017-11-27 21:54:11,561 INFO quick_run ... ran refabs for navsteps 2017-11-27 21:54:11,562 INFO root ------------------------- 2017-11-27 21:54:11,562 INFO root step 7: nav steps: run smoothr for plots 2017-11-27 21:54:11,562 INFO root navstep 4 2017-11-27 21:54:14,240 INFO quick_run ... ran smoothr 2017-11-27 21:54:14,240 INFO root ------------------------- 2017-11-27 21:54:14,240 INFO root step 8: nav steps: smooth navigation for velocities 2017-11-27 21:54:14,240 INFO root navstep 5 2017-11-27 21:54:14,241 INFO quick_run smoothing method for ship speed: refsm 2017-11-27 21:54:14,241 INFO quick_run smoothing window: 3 2017-11-27 21:54:14,241 INFO quick_run ship speed source: nav 2017-11-27 21:54:16,578 INFO quick_run ... shipspeed smoothing step done 2017-11-27 21:54:16,578 INFO root ------------------------- 2017-11-27 21:54:16,579 INFO root step 9: nav steps: put positions and uvship from refsm into codasdb 2017-11-27 21:54:16,579 INFO root navstep 6 2017-11-27 21:54:17,618 INFO quick_run ... ran put_txy 2017-11-27 21:54:18,609 INFO quick_run ... ran put_tuv 2017-11-27 21:54:18,963 INFO quick_run ... made navigation plot 2017-11-27 21:54:18,963 INFO root ------------------------- 2017-11-27 21:54:18,964 INFO root step 10: nav steps: make reflayer plots 2017-11-27 21:54:18,964 INFO root navstep 7 2017-11-27 21:54:24,770 INFO quick_run ... made reflayer plots 2017-11-27 21:54:24,771 INFO root --------------------------------------------- 2017-11-27 21:54:24,771 INFO root step 4: run calibration steps 2017-11-27 21:54:25,120 INFO quick_run ...bottom track info in check cal/botmtrk 2017-11-27 21:54:26,613 INFO quick_run ... watertrack info in cal/watertrk 2017-11-27 21:54:31,626 INFO quick_run ... check cal/watertrk for estimate 2017-11-27 17:14:43,882 INFO quick_setup found dbinfo.txt: use values if otherwise unspecified 2017-11-27 17:14:43,884 INFO quick_setup fix file is NF1704.gps 2017-11-27 17:14:43,885 INFO quick_setup reflayer: ref_method = refsm 2017-11-27 17:14:43,885 INFO quick_setup reflayer: refuv_source = nav 2017-11-27 17:14:43,885 INFO quick_setup reflayer: refuv_smoothwin = 3 2017-11-27 17:14:43,892 INFO root importing numpy version 1.11.0 2017-11-27 22:14:43,904 INFO root importing matplotlib version 1.5.1 2017-11-27 22:14:44,083 INFO root found steps2rerun: matfiles 2017-11-27 22:14:44,083 INFO root ===================================================== 2017-11-27 22:14:44,084 INFO root =========== new run: steps2rerun==================== 2017-11-27 22:14:44,084 INFO root ===================================================== 2017-11-27 22:14:44,084 INFO root command line was: /usr/local/bin/quick_adcp.py --steps2rerun matfiles --auto 2017-11-27 22:14:44,084 INFO root cwd is /media/sf_sadcp/NF1704/processing/os150nb about to run these steps: - matfiles - codaseditsetup 2017-11-27 22:14:44,096 INFO root looking for database with adcpdb/NF1704*.blk 2017-11-27 22:14:44,097 INFO root database found: listing blocks 2017-11-27 22:14:44,371 INFO root database time range: 2017-11-27 22:14:44,371 INFO root 2017/05/07 13:58:00 to 2017/06/02 15:03:25 2017-11-27 22:14:44,372 INFO root (126.581944 to 152.627373) 2017-11-27 22:14:45,271 INFO root --------------------------------------------- 2017-11-27 22:14:45,272 INFO root step 1: set up files for codas editing (gautoedit.py) 2017-11-27 22:14:45,273 INFO root --------------------------------------------- 2017-11-27 22:14:45,273 INFO root step 2: extract matlab "allbins"