2017-11-27 17:53:45,019 INFO quick_setup initializing cachefile dbinfo.txt 2017-11-27 17:53:45,024 INFO quick_setup no dbinfo.txt: initializing 2017-11-27 17:53:45,024 INFO quick_setup fix file is NF1704.gps 2017-11-27 17:53:45,024 INFO quick_setup reflayer: ref_method = refsm 2017-11-27 17:53:45,025 INFO quick_setup reflayer: refuv_source = nav 2017-11-27 17:53:45,025 INFO quick_setup reflayer: refuv_smoothwin = 3 2017-11-27 17:53:45,030 INFO root importing numpy version 1.11.0 2017-11-27 22:53:45,048 INFO root importing matplotlib version 1.5.1 2017-11-27 22:53:45,236 INFO root ===================================================== 2017-11-27 22:53:45,236 INFO root ===================================================== 2017-11-27 22:53:45,236 INFO root command line was: /usr/local/bin/quick_adcp.py --cntfile q_py.cnt 2017-11-27 22:53:45,237 INFO root cwd is /media/sf_sadcp/NF1704/processing/os150bb about to run these steps: - write_clearflags - scandata - avg_and_load - codaseditsetup - setflags - getnav - lst_hdg - plot_headcorr - navsteps - lst_temp - plot_temp - lst_npings - calib - matfiles - adcpsect - refabs - smoothnav - putnav - refplots - codaseditsetup 2017-11-27 22:53:45,243 INFO quick_setup found 271 files using wildcard expansion relative to scan directory wildcard string was: "/home/rsmith/sadcp/NF1704/at_sea_data/NF1704_merged/raw/os150/*.raw" 2017-11-27 22:53:45,339 INFO root --------------------------------------------- 2017-11-27 22:53:45,339 INFO root step 1: set up files in "edit" directory 2017-11-27 22:53:45,344 INFO quick_run ... wrote edit/clearflags.tmp 2017-11-27 22:53:45,344 INFO root --------------------------------------------- 2017-11-27 22:53:45,345 INFO root step 2: scan files for time range 2017-11-27 22:53:46,454 INFO root looking for database with adcpdb/NF1704*.blk 2017-11-27 22:53:46,456 INFO root no database found: starting from scratch 2017-11-27 22:53:46,456 INFO root --------------------------------------------- 2017-11-27 22:53:46,456 INFO root step 3: generate averaged data... 2017-11-27 22:53:46,464 INFO quick_run ... made file load/ping_editparams.txt 2017-11-27 22:53:47,216 INFO pingavg ---------------- 2017-11-27 22:53:47,217 INFO pingavg sonar is os150bb 2017-11-27 22:53:47,217 INFO pingavg Pingavg.run for time range 126.578482 to 152.630480 2017-11-27 22:53:47,217 INFO pingavg transducer offset: xducer_dx = 0.000, xducer_dy = 0.000 2017-11-27 22:53:47,217 INFO pingavg shifted positions applied to *.gpst2 and *.uvship' 2017-11-27 22:53:47,218 INFO pingavg ---------------- 2017-11-27 22:53:56,528 INFO pingavg ./ens_blk001.cmd 2017/05/07 13:58:00 2017/05/08 02:11:56 126.58194 127.09162 2017-11-27 22:54:14,285 INFO pingavg ./ens_blk002.cmd 2017/05/08 18:57:51 2017/05/09 19:52:51 127.79018 128.82837 2017-11-27 22:54:33,915 INFO pingavg ./ens_blk003.cmd 2017/05/09 19:57:50 2017/05/10 20:52:51 128.83183 129.87003 2017-11-27 22:54:54,047 INFO pingavg ./ens_blk004.cmd 2017/05/10 20:57:50 2017/05/11 21:52:50 129.87349 130.91169 2017-11-27 22:55:13,232 INFO pingavg ./ens_blk005.cmd 2017/05/11 21:57:52 2017/05/12 22:52:50 130.91518 131.95336 2017-11-27 22:55:31,594 INFO pingavg ./ens_blk006.cmd 2017/05/12 22:57:51 2017/05/13 23:52:50 131.95684 132.99502 2017-11-27 22:55:48,685 INFO pingavg ./ens_blk007.cmd 2017/05/13 23:57:51 2017/05/15 00:52:51 132.99850 134.03670 2017-11-27 22:56:08,380 INFO pingavg ./ens_blk008.cmd 2017/05/15 00:57:52 2017/05/16 01:52:51 134.04018 135.07837 2017-11-27 22:56:27,964 INFO pingavg ./ens_blk009.cmd 2017/05/16 01:57:50 2017/05/17 02:52:51 135.08183 136.12004 2017-11-27 22:56:47,527 INFO pingavg ./ens_blk010.cmd 2017/05/17 02:57:50 2017/05/18 03:52:52 136.12350 137.16171 2017-11-27 22:57:06,489 INFO pingavg ./ens_blk011.cmd 2017/05/18 03:57:52 2017/05/19 04:52:50 137.16519 138.20336 2017-11-27 22:57:17,230 INFO pingavg ./ens_blk012.cmd 2017/05/19 04:57:52 2017/05/19 16:45:57 138.20685 138.69857 2017-11-27 22:57:39,366 INFO pingavg ./ens_blk013.cmd 2017/05/22 19:28:25 2017/05/23 20:23:26 141.81140 142.84960 2017-11-27 22:58:02,456 INFO pingavg ./ens_blk014.cmd 2017/05/23 20:28:25 2017/05/24 21:23:26 142.85307 143.89127 2017-11-27 22:58:26,205 INFO pingavg ./ens_blk015.cmd 2017/05/24 21:28:25 2017/05/25 22:23:25 143.89473 144.93292 2017-11-27 22:58:45,505 INFO pingavg ./ens_blk016.cmd 2017/05/25 22:28:26 2017/05/26 23:23:26 144.93641 145.97460 2017-11-27 22:59:08,194 INFO pingavg ./ens_blk017.cmd 2017/05/26 23:28:25 2017/05/28 00:23:26 145.97807 147.01627 2017-11-27 22:59:32,922 INFO pingavg ./ens_blk018.cmd 2017/05/28 00:28:25 2017/05/29 01:23:24 147.01974 148.05792 2017-11-27 22:59:53,772 INFO pingavg ./ens_blk019.cmd 2017/05/29 01:28:25 2017/05/30 02:23:26 148.06140 149.09960 2017-11-27 23:00:13,434 INFO pingavg ./ens_blk020.cmd 2017/05/30 02:28:25 2017/05/31 03:23:25 149.10307 150.14126 2017-11-27 23:00:33,871 INFO pingavg ./ens_blk021.cmd 2017/05/31 03:28:26 2017/06/01 04:23:26 150.14475 151.18294 2017-11-27 23:00:54,117 INFO pingavg ./ens_blk022.cmd 2017/06/01 04:28:25 2017/06/02 05:23:26 151.18640 152.22461 2017-11-27 23:01:01,605 INFO pingavg ./ens_blk023.cmd 2017/06/02 05:28:25 2017/06/02 15:03:25 152.22807 152.62737 2017-11-27 23:01:01,679 INFO pingavg batch 152.62391836 152.62739058 115 22 nf2017_152_50400 2017-11-27 23:01:01,680 INFO pingavg Wrote bin, cmd for 6407 ensembles in 23 files. 435 seconds 2017-11-27 23:01:01,714 INFO root --------------------------------------------- 2017-11-27 23:01:01,715 INFO root step 4: load averaged data (to database) 2017-11-27 23:01:04,090 INFO quick_run 24 block files present 2017-11-27 23:01:04,253 INFO root database time range: 2017-11-27 23:01:04,254 INFO root 2017/05/07 13:58:00 to 2017/06/02 15:03:25 2017-11-27 23:01:04,254 INFO root (126.581944 to 152.627373) 2017-11-27 23:01:04,869 INFO root --------------------------------------------- 2017-11-27 23:01:04,870 INFO root step 5: set up files for codas editing (gautoedit.py) 2017-11-27 23:01:04,876 INFO quick_run ... wrote edit/codas_editparams.txt 2017-11-27 23:01:04,876 INFO root --------------------------------------------- 2017-11-27 23:01:04,876 INFO root step 6: run setflags? 2017-11-27 23:01:06,238 INFO root --------------------------------------------- 2017-11-27 23:01:06,239 INFO root step 7: get navigation 2017-11-27 23:01:06,320 INFO quick_subs navigation file nav/NF1704.gps created from load/*.gps2 2017-11-27 23:01:06,369 INFO quick_subs navigation file nav/NF1704.agt created from load/*.gpst2 2017-11-27 23:01:06,836 INFO quick_run plotted uvship 2017-11-27 23:01:06,837 INFO root --------------------------------------------- 2017-11-27 23:01:06,837 INFO root step 8: list heading 2017-11-27 23:01:07,197 INFO quick_run ... headings extracted 2017-11-27 23:01:07,198 INFO root --------------------------------------------- 2017-11-27 23:01:07,198 INFO root step 9: plot heading correction 2017-11-27 23:01:09,224 INFO quick_run plots are in cal/rotate/*png 2017-11-27 23:01:09,225 INFO root ------------------------- 2017-11-27 23:01:09,225 INFO root ---- running navsteps --- 2017-11-27 23:01:09,225 INFO root ------------------------- 2017-11-27 23:01:09,225 INFO root step 10: nav steps: run adcpsect 2017-11-27 23:01:09,226 INFO root navstep 1 2017-11-27 23:01:10,085 INFO quick_run ... ran adcpsect for navsteps 2017-11-27 23:01:10,086 INFO root ------------------------- 2017-11-27 23:01:10,086 INFO root step 11: nav steps: run refabs 2017-11-27 23:01:10,087 INFO root navstep 2 2017-11-27 23:01:10,183 INFO quick_run ... ran refabs for navsteps 2017-11-27 23:01:10,184 INFO root ------------------------- 2017-11-27 23:01:10,184 INFO root step 12: nav steps: run smoothr for plots 2017-11-27 23:01:10,184 INFO root navstep 3 2017-11-27 23:01:13,502 INFO quick_run ... ran smoothr 2017-11-27 23:01:13,503 INFO root ------------------------- 2017-11-27 23:01:13,503 INFO root step 13: nav steps: smooth navigation for velocities 2017-11-27 23:01:13,503 INFO root navstep 4 2017-11-27 23:01:13,504 INFO quick_run smoothing method for ship speed: refsm 2017-11-27 23:01:13,504 INFO quick_run smoothing window: 3 2017-11-27 23:01:13,504 INFO quick_run ship speed source: nav 2017-11-27 23:01:15,890 INFO quick_run ... shipspeed smoothing step done 2017-11-27 23:01:15,890 INFO root ------------------------- 2017-11-27 23:01:15,890 INFO root step 14: nav steps: put positions and uvship from refsm into codasdb 2017-11-27 23:01:15,891 INFO root navstep 5 2017-11-27 23:01:17,036 INFO quick_run ... ran put_txy 2017-11-27 23:01:17,891 INFO quick_run ... ran put_tuv 2017-11-27 23:01:18,204 INFO quick_run ... made navigation plot 2017-11-27 23:01:18,205 INFO root ------------------------- 2017-11-27 23:01:18,205 INFO root step 15: nav steps: make reflayer plots 2017-11-27 23:01:18,205 INFO root navstep 6 2017-11-27 23:01:22,045 INFO quick_run ... made reflayer plots 2017-11-27 23:01:22,045 INFO root --------------------------------------------- 2017-11-27 23:01:22,045 INFO root step 10: run calibration steps 2017-11-27 23:01:22,284 INFO quick_run ...bottom track info in check cal/botmtrk 2017-11-27 23:01:23,209 INFO quick_run ... watertrack info in cal/watertrk 2017-11-27 23:01:26,039 INFO quick_run ... check cal/watertrk for estimate 2017-11-27 23:01:26,040 INFO root --------------------------------------------- 2017-11-27 23:01:26,041 INFO root step 11: extract and plot temperature 2017-11-27 23:01:26,649 INFO quick_run plotted temperature 2017-11-27 23:01:26,649 INFO root --------------------------------------------- 2017-11-27 23:01:26,649 INFO root step 12: extract and plot number of pings per ensemble 2017-11-27 23:01:27,544 INFO quick_run ... plotted number of pings per ensemble 2017-11-27 23:01:27,546 INFO root --------------------------------------------- 2017-11-27 23:01:27,547 INFO root step 13: extract matlab "allbins" 2017-11-27 23:01:31,947 INFO root --------------------------------------------- 2017-11-27 23:01:31,948 INFO root writing "cruise_info.txt" 2017-11-29 16:03:49,187 INFO quick_setup found dbinfo.txt: use values if otherwise unspecified 2017-11-29 16:03:49,189 INFO quick_setup fix file is NF1704.gps 2017-11-29 16:03:49,190 INFO quick_setup reflayer: ref_method = refsm 2017-11-29 16:03:49,190 INFO quick_setup reflayer: refuv_source = nav 2017-11-29 16:03:49,190 INFO quick_setup reflayer: refuv_smoothwin = 3 2017-11-29 16:03:49,198 INFO root importing numpy version 1.11.0 2017-11-29 21:03:49,252 INFO root importing matplotlib version 1.5.1 2017-11-29 21:03:49,422 INFO root found steps2rerun: navsteps:calib 2017-11-29 21:03:49,422 INFO root ===================================================== 2017-11-29 21:03:49,422 INFO root =========== new run: steps2rerun==================== 2017-11-29 21:03:49,422 INFO root ===================================================== 2017-11-29 21:03:49,423 INFO root command line was: /usr/local/bin/quick_adcp.py --steps2rerun navsteps:calib --auto 2017-11-29 21:03:49,423 INFO root cwd is /media/sf_sadcp/NF1704/processing/os150bb about to run these steps: - navsteps - calib - adcpsect - refabs - smoothnav - putnav - refplots - codaseditsetup 2017-11-29 21:03:49,433 INFO root looking for database with adcpdb/NF1704*.blk 2017-11-29 21:03:49,434 INFO root database found: listing blocks 2017-11-29 21:03:49,853 INFO root database time range: 2017-11-29 21:03:49,854 INFO root 2017/05/07 13:58:00 to 2017/06/02 15:03:25 2017-11-29 21:03:49,854 INFO root (126.581944 to 152.627373) 2017-11-29 21:03:50,435 INFO root --------------------------------------------- 2017-11-29 21:03:50,436 INFO root step 1: set up files for codas editing (gautoedit.py) 2017-11-29 21:03:50,436 INFO root --------------------------------------------- 2017-11-29 21:03:50,436 INFO root step 2: run all navsteps 2017-11-29 21:03:50,437 INFO root ------------------------- 2017-11-29 21:03:50,437 INFO root ---- running navsteps --- 2017-11-29 21:03:50,437 INFO root ------------------------- 2017-11-29 21:03:50,437 INFO root step 3: adjust GPS sensor location 2017-11-29 21:03:50,437 INFO root navstep 1 2017-11-29 21:03:50,572 INFO root ------------------------- 2017-11-29 21:03:50,572 INFO root step 4: nav steps: run adcpsect 2017-11-29 21:03:50,572 INFO root navstep 2 2017-11-29 21:03:51,373 INFO quick_run ... ran adcpsect for navsteps 2017-11-29 21:03:51,373 INFO root ------------------------- 2017-11-29 21:03:51,373 INFO root step 5: nav steps: run refabs 2017-11-29 21:03:51,374 INFO root navstep 3 2017-11-29 21:03:51,458 INFO quick_run ... ran refabs for navsteps 2017-11-29 21:03:51,458 INFO root ------------------------- 2017-11-29 21:03:51,458 INFO root step 6: nav steps: run smoothr for plots 2017-11-29 21:03:51,458 INFO root navstep 4 2017-11-29 21:03:54,669 INFO quick_run ... ran smoothr 2017-11-29 21:03:54,670 INFO root ------------------------- 2017-11-29 21:03:54,670 INFO root step 7: nav steps: smooth navigation for velocities 2017-11-29 21:03:54,671 INFO root navstep 5 2017-11-29 21:03:54,671 INFO quick_run smoothing method for ship speed: refsm 2017-11-29 21:03:54,671 INFO quick_run smoothing window: 3 2017-11-29 21:03:54,671 INFO quick_run ship speed source: nav 2017-11-29 21:03:56,979 INFO quick_run ... shipspeed smoothing step done 2017-11-29 21:03:56,979 INFO root ------------------------- 2017-11-29 21:03:56,979 INFO root step 8: nav steps: put positions and uvship from refsm into codasdb 2017-11-29 21:03:56,979 INFO root navstep 6 2017-11-29 21:03:57,940 INFO quick_run ... ran put_txy 2017-11-29 21:03:58,712 INFO quick_run ... ran put_tuv 2017-11-29 21:03:58,991 INFO quick_run ... made navigation plot 2017-11-29 21:03:58,991 INFO root ------------------------- 2017-11-29 21:03:58,992 INFO root step 9: nav steps: make reflayer plots 2017-11-29 21:03:58,992 INFO root navstep 7 2017-11-29 21:04:02,557 INFO quick_run ... made reflayer plots 2017-11-29 21:04:02,557 INFO root --------------------------------------------- 2017-11-29 21:04:02,557 INFO root step 3: run calibration steps 2017-11-29 21:04:02,824 INFO quick_run ...bottom track info in check cal/botmtrk 2017-11-29 21:04:03,696 INFO quick_run ... watertrack info in cal/watertrk 2017-11-29 21:04:06,606 INFO quick_run ... check cal/watertrk for estimate 2017-11-29 16:06:56,658 INFO quick_setup found dbinfo.txt: use values if otherwise unspecified 2017-11-29 16:06:56,659 INFO quick_setup fix file is NF1704.gps 2017-11-29 16:06:56,660 INFO quick_setup reflayer: ref_method = refsm 2017-11-29 16:06:56,660 INFO quick_setup reflayer: refuv_source = nav 2017-11-29 16:06:56,660 INFO quick_setup reflayer: refuv_smoothwin = 3 2017-11-29 16:06:56,668 INFO root importing numpy version 1.11.0 2017-11-29 21:06:56,678 INFO root importing matplotlib version 1.5.1 2017-11-29 21:06:56,854 INFO root found steps2rerun: rotate:navsteps:calib 2017-11-29 21:06:56,854 INFO root ===================================================== 2017-11-29 21:06:56,854 INFO root =========== new run: steps2rerun==================== 2017-11-29 21:06:56,854 INFO root ===================================================== 2017-11-29 21:06:56,855 INFO root command line was: /usr/local/bin/quick_adcp.py --cntfile qrot_py.cnt 2017-11-29 21:06:56,855 INFO root cwd is /media/sf_sadcp/NF1704/processing/os150bb about to run these steps: - rotate - navsteps - calib - adcpsect - refabs - smoothnav - putnav - refplots - codaseditsetup 2017-11-29 21:06:56,861 INFO root looking for database with adcpdb/NF1704*.blk 2017-11-29 21:06:56,862 INFO root database found: listing blocks 2017-11-29 21:06:57,249 INFO root database time range: 2017-11-29 21:06:57,249 INFO root 2017/05/07 13:58:00 to 2017/06/02 15:03:25 2017-11-29 21:06:57,250 INFO root (126.581944 to 152.627373) 2017-11-29 21:06:57,817 INFO root --------------------------------------------- 2017-11-29 21:06:57,817 INFO root step 1: set up files for codas editing (gautoedit.py) 2017-11-29 21:06:57,818 INFO root --------------------------------------------- 2017-11-29 21:06:57,818 INFO root step 2: rotate velocities 2017-11-29 21:06:57,820 INFO quick_subs 2017/06/02 15:04:00 2017-11-29 21:06:57,820 INFO quick_subs last rotate dday 2017-11-29 21:06:57,821 INFO quick_subs 152.627777778 2017-11-29 21:06:57,821 INFO quick_subs first database dday 2017-11-29 21:06:57,821 INFO quick_subs 126.581944444 2017-11-29 21:07:00,339 INFO root --------------------------------------------- 2017-11-29 21:07:00,340 INFO root step 3: run all navsteps 2017-11-29 21:07:00,340 INFO root ------------------------- 2017-11-29 21:07:00,340 INFO root ---- running navsteps --- 2017-11-29 21:07:00,340 INFO root ------------------------- 2017-11-29 21:07:00,340 INFO root step 4: adjust GPS sensor location 2017-11-29 21:07:00,341 INFO root navstep 1 2017-11-29 21:07:00,456 INFO root ------------------------- 2017-11-29 21:07:00,457 INFO root step 5: nav steps: run adcpsect 2017-11-29 21:07:00,457 INFO root navstep 2 2017-11-29 21:07:01,274 INFO quick_run ... ran adcpsect for navsteps 2017-11-29 21:07:01,274 INFO root ------------------------- 2017-11-29 21:07:01,274 INFO root step 6: nav steps: run refabs 2017-11-29 21:07:01,274 INFO root navstep 3 2017-11-29 21:07:01,347 INFO quick_run ... ran refabs for navsteps 2017-11-29 21:07:01,347 INFO root ------------------------- 2017-11-29 21:07:01,348 INFO root step 7: nav steps: run smoothr for plots 2017-11-29 21:07:01,348 INFO root navstep 4 2017-11-29 21:07:04,520 INFO quick_run ... ran smoothr 2017-11-29 21:07:04,520 INFO root ------------------------- 2017-11-29 21:07:04,520 INFO root step 8: nav steps: smooth navigation for velocities 2017-11-29 21:07:04,521 INFO root navstep 5 2017-11-29 21:07:04,521 INFO quick_run smoothing method for ship speed: refsm 2017-11-29 21:07:04,521 INFO quick_run smoothing window: 3 2017-11-29 21:07:04,521 INFO quick_run ship speed source: nav 2017-11-29 21:07:06,831 INFO quick_run ... shipspeed smoothing step done 2017-11-29 21:07:06,832 INFO root ------------------------- 2017-11-29 21:07:06,832 INFO root step 9: nav steps: put positions and uvship from refsm into codasdb 2017-11-29 21:07:06,832 INFO root navstep 6 2017-11-29 21:07:07,811 INFO quick_run ... ran put_txy 2017-11-29 21:07:08,535 INFO quick_run ... ran put_tuv 2017-11-29 21:07:08,795 INFO quick_run ... made navigation plot 2017-11-29 21:07:08,795 INFO root ------------------------- 2017-11-29 21:07:08,795 INFO root step 10: nav steps: make reflayer plots 2017-11-29 21:07:08,796 INFO root navstep 7 2017-11-29 21:07:12,434 INFO quick_run ... made reflayer plots 2017-11-29 21:07:12,434 INFO root --------------------------------------------- 2017-11-29 21:07:12,434 INFO root step 4: run calibration steps 2017-11-29 21:07:12,665 INFO quick_run ...bottom track info in check cal/botmtrk 2017-11-29 21:07:13,605 INFO quick_run ... watertrack info in cal/watertrk 2017-11-29 21:07:16,773 INFO quick_run ... check cal/watertrk for estimate 2017-11-30 12:36:04,422 INFO quick_setup found dbinfo.txt: use values if otherwise unspecified 2017-11-30 12:36:04,425 INFO quick_setup fix file is NF1704.gps 2017-11-30 12:36:04,425 INFO quick_setup reflayer: ref_method = refsm 2017-11-30 12:36:04,425 INFO quick_setup reflayer: refuv_source = nav 2017-11-30 12:36:04,427 INFO quick_setup reflayer: refuv_smoothwin = 3 2017-11-30 12:36:04,434 INFO root importing numpy version 1.11.0 2017-11-30 17:36:04,458 INFO root importing matplotlib version 1.5.1 2017-11-30 17:36:04,640 INFO root found steps2rerun: apply_edit:navsteps:calib 2017-11-30 17:36:04,641 INFO root ===================================================== 2017-11-30 17:36:04,641 INFO root =========== new run: steps2rerun==================== 2017-11-30 17:36:04,641 INFO root ===================================================== 2017-11-30 17:36:04,641 INFO root command line was: /usr/local/bin/quick_adcp.py --cntfile qedit_py.cnt 2017-11-30 17:36:04,641 INFO root cwd is /media/sf_sadcp/NF1704/processing/os150bb about to run these steps: - apply_edit - navsteps - calib - adcpsect - refabs - smoothnav - putnav - refplots - codaseditsetup 2017-11-30 17:36:04,650 INFO root looking for database with adcpdb/NF1704*.blk 2017-11-30 17:36:04,651 INFO root database found: listing blocks 2017-11-30 17:36:04,940 INFO root database time range: 2017-11-30 17:36:04,941 INFO root 2017/05/07 13:58:00 to 2017/06/02 15:03:25 2017-11-30 17:36:04,941 INFO root (126.581944 to 152.627373) 2017-11-30 17:36:05,540 INFO root --------------------------------------------- 2017-11-30 17:36:05,540 INFO root step 1: set up files for codas editing (gautoedit.py) 2017-11-30 17:36:05,541 INFO root --------------------------------------------- 2017-11-30 17:36:05,541 INFO root step 2: apply editing 2017-11-30 17:36:06,799 INFO root --------------------------------------------- 2017-11-30 17:36:06,799 INFO root step 3: run all navsteps 2017-11-30 17:36:06,800 INFO root ------------------------- 2017-11-30 17:36:06,800 INFO root ---- running navsteps --- 2017-11-30 17:36:06,800 INFO root ------------------------- 2017-11-30 17:36:06,800 INFO root step 4: adjust GPS sensor location 2017-11-30 17:36:06,800 INFO root navstep 1 2017-11-30 17:36:06,917 INFO root ------------------------- 2017-11-30 17:36:06,917 INFO root step 5: nav steps: run adcpsect 2017-11-30 17:36:06,917 INFO root navstep 2 2017-11-30 17:36:07,727 INFO quick_run ... ran adcpsect for navsteps 2017-11-30 17:36:07,727 INFO root ------------------------- 2017-11-30 17:36:07,728 INFO root step 6: nav steps: run refabs 2017-11-30 17:36:07,728 INFO root navstep 3 2017-11-30 17:36:07,806 INFO quick_run ... ran refabs for navsteps 2017-11-30 17:36:07,806 INFO root ------------------------- 2017-11-30 17:36:07,806 INFO root step 7: nav steps: run smoothr for plots 2017-11-30 17:36:07,806 INFO root navstep 4 2017-11-30 17:36:11,041 INFO quick_run ... ran smoothr 2017-11-30 17:36:11,042 INFO root ------------------------- 2017-11-30 17:36:11,042 INFO root step 8: nav steps: smooth navigation for velocities 2017-11-30 17:36:11,042 INFO root navstep 5 2017-11-30 17:36:11,042 INFO quick_run smoothing method for ship speed: refsm 2017-11-30 17:36:11,043 INFO quick_run smoothing window: 3 2017-11-30 17:36:11,043 INFO quick_run ship speed source: nav 2017-11-30 17:36:13,493 INFO quick_run ... shipspeed smoothing step done 2017-11-30 17:36:13,493 INFO root ------------------------- 2017-11-30 17:36:13,494 INFO root step 9: nav steps: put positions and uvship from refsm into codasdb 2017-11-30 17:36:13,494 INFO root navstep 6 2017-11-30 17:36:14,515 INFO quick_run ... ran put_txy 2017-11-30 17:36:15,283 INFO quick_run ... ran put_tuv 2017-11-30 17:36:15,551 INFO quick_run ... made navigation plot 2017-11-30 17:36:15,552 INFO root ------------------------- 2017-11-30 17:36:15,552 INFO root step 10: nav steps: make reflayer plots 2017-11-30 17:36:15,552 INFO root navstep 7 2017-11-30 17:36:19,242 INFO quick_run ... made reflayer plots 2017-11-30 17:36:19,243 INFO root --------------------------------------------- 2017-11-30 17:36:19,243 INFO root step 4: run calibration steps 2017-11-30 17:36:19,521 INFO quick_run ...bottom track info in check cal/botmtrk 2017-11-30 17:36:20,393 INFO quick_run ... watertrack info in cal/watertrk 2017-11-30 17:36:23,340 INFO quick_run ... check cal/watertrk for estimate 2017-11-30 13:45:38,853 INFO quick_setup found dbinfo.txt: use values if otherwise unspecified 2017-11-30 13:45:38,854 INFO quick_setup fix file is NF1704.gps 2017-11-30 13:45:38,855 INFO quick_setup reflayer: ref_method = refsm 2017-11-30 13:45:38,855 INFO quick_setup reflayer: refuv_source = nav 2017-11-30 13:45:38,855 INFO quick_setup reflayer: refuv_smoothwin = 3 2017-11-30 13:45:38,862 INFO root importing numpy version 1.11.0 2017-11-30 18:45:38,875 INFO root importing matplotlib version 1.5.1 2017-11-30 18:45:39,123 INFO root found steps2rerun: matfiles 2017-11-30 18:45:39,124 INFO root ===================================================== 2017-11-30 18:45:39,124 INFO root =========== new run: steps2rerun==================== 2017-11-30 18:45:39,124 INFO root ===================================================== 2017-11-30 18:45:39,124 INFO root command line was: /usr/local/bin/quick_adcp.py --steps2rerun matfiles --auto 2017-11-30 18:45:39,124 INFO root cwd is /media/sf_sadcp/NF1704/processing/os150bb about to run these steps: - matfiles - codaseditsetup 2017-11-30 18:45:39,136 INFO root looking for database with adcpdb/NF1704*.blk 2017-11-30 18:45:39,140 INFO root database found: listing blocks 2017-11-30 18:45:39,518 INFO root database time range: 2017-11-30 18:45:39,519 INFO root 2017/05/07 13:58:00 to 2017/06/02 15:03:25 2017-11-30 18:45:39,519 INFO root (126.581944 to 152.627373) 2017-11-30 18:45:40,913 INFO root --------------------------------------------- 2017-11-30 18:45:40,914 INFO root step 1: set up files for codas editing (gautoedit.py) 2017-11-30 18:45:40,914 INFO root --------------------------------------------- 2017-11-30 18:45:40,915 INFO root step 2: extract matlab "allbins"