stc02_devel_log: Sandbox/scratch test script for ctdcal devel
DESCRIPTION: This script is a diary created from the commands issued
during the development of ctdcal. It is not guaranteed to run without
error from beginning to end. Rather, it is a summary of commands that
have worked in specific situations. It is a log of ideas that may or may not
have found their way into the final product. Use with caution.
My convention was to comment out lines which worked but only need to
be run once at the beginning of the calibration project. I left lines uncommented
which may be run multiple times without changing the outcome.
AUTHOR: Derrick Snowden
NOAA/AOML/PhOD
Mon Sep 27 19:14:31 EDT 20040001 function stc02_devel_log 0002 % stc02_devel_log: Sandbox/scratch test script for ctdcal devel 0003 % 0004 % DESCRIPTION: This script is a diary created from the commands issued 0005 % during the development of ctdcal. It is not guaranteed to run without 0006 % error from beginning to end. Rather, it is a summary of commands that 0007 % have worked in specific situations. It is a log of ideas that may or may not 0008 % have found their way into the final product. Use with caution. 0009 % 0010 % My convention was to comment out lines which worked but only need to 0011 % be run once at the beginning of the calibration project. I left lines uncommented 0012 % which may be run multiple times without changing the outcome. 0013 % 0014 % 0015 % AUTHOR: Derrick Snowden 0016 % NOAA/AOML/PhOD 0017 % Mon Sep 27 19:14:31 EDT 2004 0018 % 0019 0020 % 0021 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 0022 0023 % 0024 % EXAMPLES: 0025 % 0026 0027 % Only do this once. Comment out after the date following... 0028 % Mon Sep 27 19:15:13 EDT 2004 @10 /Internet Time/ 0029 % Setup stc02/ directory in 0030 % /doris/snowden/CTD/test/ 0031 % make_cruise_dir('/doris/snowden/CTD/test/','stc02') 0032 % The results are listed below 0033 %%% cd stc02 0034 %%% ls 0035 % bottle/ ctdcalpath.m log/ oxy/ register_cruise.m tmp/ 0036 % calibrated/ figures/ mfiles/ proc_data/ salts/ 0037 0038 % for testing purposes and to minimize path conflicts I will rename the two mfiles 0039 % in the stc02 directory 0040 %%% ! mv ctdcalpath.m stc02calpath.m 0041 %%% ! rm register_cruise.m 0042 %%% ! ln -s /doris/snowden/devel/ctdcal/demos/register_cruise.m /doris/snowden/CTD/test/stc02/register_stc02.m 0043 % register_cruise was renamed. This is different than the 0044 % normal installation and is specific to development only. 0045 0046 % Add the following line to the stc02calpath.m file 0047 % addpath /doris/snowden/CTD/test 0048 % so that the log file is in the path. 0049 0050 0051 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 0052 % The following lines may need to be run more than once. 0053 % Register cruise 0054 %%% register_cruise or register_stc02 0055 %%% stc02calpath 0056 0057 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 0058 % Not yet tested. 0059 % Copy data into directory tree by hand first then use update_calibration_data 0060 % Alternatively, edit the register_cruise.m file to point to the right data location 0061 % cd /doris/snowden/CTD/test/stc02 0062 % ! rmdir proc_data 0063 % ! ln -s /doris/snowden/CTD/Data/stc02/proc_data/ 0064 % ! rmdir raw_data 0065 % ! ln -s /doris/snowden/CTD/Data/stc02/raw_data/ 0066 % ! rmdir salts 0067 % ! ln -s /doris/snowden/CTD/Data/stc02/salts/ 0068 % ! rmdir oxy 0069 % ! ln -s /doris/snowden/CTD/Data/stc02/oxy/ 0070 % ! rmdir bottle 0071 % ! ln -s /doris/snowden/CTD/Data/stc02/bottle/ 0072 0073 % Load the database ... 0074 load_btl('stc02') 0075 load_cnv('stc02') 0076 load_bl('stc02') % I need to get this from Carlos. 0077 load_oxy('stc02') % This may have a problem with filenames. 0078 % There are more *.oxy files due to some bad titrations see ALT1001.oxy which is 0079 % trash I think. 0080 0081 % AUTOSAL stuff is its own beast. load_salts is the wrapper but it may need to be modified 0082 % to address cruise specific things. It'll get better. 0083 % For the stc02 calibration I performed the following steps since the file naming conventions 0084 % were non standard. I copied the *n.txt files to salts/*.dat and the *.raw files to salts/*.raw. 0085 % Then the *n.txt files were renamed to have a *.dat extension which better adhered to the way 0086 % other cruises were handled. 0087 0088 % TODO: it would be nice to have a loading script that copies the files needed into a working directory locally. 0089 0090 0091 % The actual function which does everything related to parsing and loading that autosal 0092 % analysis files is load_salts. Rename load_salts from the CTDCALDIR as load_salts_wward3 0093 % and place it in the CRUISEDIR/mfiles directory. Edit it and follow the directions in the 0094 % comments 0095 % NOTE: There are at least two files with the 0096 salts = load_salts_stc02('stc02'); 0097 0098 % For stc02 this won't complete until I find the stc02065.bl file that is not corrupted. 0099 % look on the cruise cd since it is not on doris or phodnet. 0100 make_cond_sumfile('stc02'); % Needs editing 0101 0102 % Begin the fitting 0103 0104 0105 0106 0107 0108 return 0109 0110