2018-03-01 18:33:27,084 INFO repeater task report_generator output: cruisename is cruisename is report_dir is report_dir is uhdas_dir is uhdas_dir is 0.0 sec : initial png rsync 0.0 sec : initial png rsync 0.0 sec : initial png rsync 0.0 sec : initial png rsync 1.0 sec : navplot: plot_rnav.py -s300 --noshow --title RB1801_C --outfile /home/data/RB1801_C/reports/nav_plot_all /home/data/RB1801_C/rbin/gpsnav/*.gps.rbin 1.0 sec : navplot: plot_rnav.py -s300 --noshow --title RB1801_C --outfile /home/data/RB1801_C/reports/nav_plot_all /home/data/RB1801_C/rbin/gpsnav/*.gps.rbin 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_topo.png /home/data/RB1801_C/reports/nav_plot_all_topoT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_topo.png /home/data/RB1801_C/reports/nav_plot_all_topoT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_txy.png /home/data/RB1801_C/reports/nav_plot_all_txyT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_txy.png /home/data/RB1801_C/reports/nav_plot_all_txyT.png 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75nb/png_archive/ /home/data/RB1801_C/reports/os75nb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75nb/png_archive/ /home/data/RB1801_C/reports/os75nb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75bb/png_archive/ /home/data/RB1801_C/reports/os75bb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75bb/png_archive/ /home/data/RB1801_C/reports/os75bb_pngarchive 0.0 sec : uhdas_overview: uhdas_info.py --overview --logfile /home/data/RB1801_C/reports/uhdas_overview.txt /home/data/RB1801_C 0.0 sec : uhdas_overview: uhdas_info.py --overview --logfile /home/data/RB1801_C/reports/uhdas_overview.txt /home/data/RB1801_C 0.0 sec : sonar_summary: sonar_summary.py --outfile /home/data/RB1801_C/reports/sonar_summary.txt --uhdas_dir /home/data/RB1801_C 0.0 sec : sonar_summary: sonar_summary.py --outfile /home/data/RB1801_C/reports/sonar_summary.txt --uhdas_dir /home/data/RB1801_C 0.0 sec : adcp_settings: uhdas_info.py --settings --logfile /home/data/RB1801_C/reports/ADCP_settings.txt /home/data/RB1801_C 0.0 sec : adcp_settings: uhdas_info.py --settings --logfile /home/data/RB1801_C/reports/ADCP_settings.txt /home/data/RB1801_C 0.0 sec : adcp_cals: uhdas_info.py --cals --logfile /home/data/RB1801_C/reports/ADCP_cals.txt /home/data/RB1801_C 0.0 sec : adcp_cals: uhdas_info.py --cals --logfile /home/data/RB1801_C/reports/ADCP_cals.txt /home/data/RB1801_C 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : hcorr_serial_plot: plot_posmv.py --cutoff 0.020 -s 180 -o /home/data/RB1801_C/reports/posmv_quality --noshow /home/data/RB1801_C 1.0 sec : hcorr_serial_plot: plot_posmv.py --cutoff 0.020 -s 180 -o /home/data/RB1801_C/reports/posmv_quality --noshow /home/data/RB1801_C 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_proc.py /home/data/RB1801_C/reports/RB1801_C_proc.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_proc.py /home/data/RB1801_C/reports/RB1801_C_proc.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_sensor.py /home/data/RB1801_C/reports/RB1801_C_sensor.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_sensor.py /home/data/RB1801_C/reports/RB1801_C_sensor.py.txt 3.0 seconds elapsed 3.0 seconds elapsed html page starts here: /home/data/RB1801_C/reports/index.html html page starts here: /home/data/RB1801_C/reports/index.html 2018-03-01 18:33:27,085 INFO repeater task report_generator ended after 3.7 seconds 2018-03-01 18:33:32,091 INFO repeater task os75nb_lastensq starting 10.1 seconds late 2018-03-01 18:33:34,081 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 18:33:34,081 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2018-03-01 18:33:34,081 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 18:33:12 2018-03-01 18:38:14,653 INFO repeater task os75nb_quick starting 3.0 seconds late 2018-03-01 18:38:16,902 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-03-01 18:38:16,902 INFO repeater task os75nb_quick ended after 2.2 seconds 2018-03-01 18:38:16,902 INFO repeater task os75nb_lastvec starting 5.3 seconds late 2018-03-01 18:38:17,265 INFO repeater task os75nb_lastvec ended after 0.4 seconds 2018-03-01 18:38:17,266 INFO repeater task os75nb_3dayplots starting 5.6 seconds late 2018-03-01 18:38:22,030 INFO repeater task os75nb_3dayplots output: zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-03-01 18:38:22,031 INFO repeater task os75nb_3dayplots ended after 4.8 seconds 2018-03-01 18:38:27,037 INFO repeater task os75nb_lastensq starting 5.0 seconds late 2018-03-01 18:38:29,043 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 18:38:29,044 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2018-03-01 18:38:29,044 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 18:38:12 2018-03-01 18:43:14,669 INFO repeater task os75nb_3dayplots starting 3.0 seconds late 2018-03-01 18:43:19,530 INFO repeater task os75nb_3dayplots output: zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-03-01 18:43:19,530 INFO repeater task os75nb_3dayplots ended after 4.9 seconds 2018-03-01 18:43:24,535 INFO repeater task os75nb_lastensq starting 2.5 seconds late 2018-03-01 18:43:26,472 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 18:43:26,473 INFO repeater task os75nb_lastensq ended after 1.9 seconds 2018-03-01 18:43:26,473 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 18:43:12 2018-03-01 18:43:26,473 INFO repeater task os75nb_quick starting 4.8 seconds late 2018-03-01 18:43:28,749 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-03-01 18:43:28,749 INFO repeater task os75nb_quick ended after 2.3 seconds 2018-03-01 18:43:28,749 INFO repeater task os75nb_lastvec starting 7.1 seconds late 2018-03-01 18:43:29,107 INFO repeater task os75nb_lastvec ended after 0.4 seconds 2018-03-01 18:48:14,605 INFO repeater task os75nb_3dayplots starting 3.0 seconds late 2018-03-01 18:48:19,528 INFO repeater task os75nb_3dayplots output: zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-03-01 18:48:19,528 INFO repeater task os75nb_3dayplots ended after 4.9 seconds 2018-03-01 18:48:19,528 INFO repeater task os75nb_tsstats starting 7.9 seconds late 2018-03-01 18:48:20,116 INFO repeater task os75nb_tsstats output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 18:48:20,116 INFO repeater task os75nb_tsstats ended after 0.6 seconds 2018-03-01 18:48:20,117 INFO repeater task os75nb_10pings starting 8.5 seconds late 2018-03-01 18:48:20,218 INFO repeater task os75nb_10pings ended after 0.1 seconds 2018-03-01 18:48:20,218 INFO repeater task os75nb_beamplots starting 8.6 seconds late 2018-03-01 18:48:21,225 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /usr/local/currents/bin 2018-03-01 18:48:21,225 INFO repeater task os75nb_beamplots ended after 1.0 seconds 2018-03-01 18:48:21,225 INFO repeater task os75nb_beamplots starting 9.6 seconds late 2018-03-01 18:48:22,165 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /usr/local/currents/bin 2018-03-01 18:48:22,165 INFO repeater task os75nb_beamplots ended after 0.9 seconds 2018-03-01 18:48:22,166 INFO repeater task posmv_hcorrstats starting 10.4 seconds late 2018-03-01 18:48:23,089 INFO repeater task posmv_hcorrstats ended after 0.9 seconds 2018-03-01 18:48:23,089 INFO repeater task posmv_plotposmv starting 11.3 seconds late 2018-03-01 18:48:26,056 INFO repeater task posmv_plotposmv ended after 3.0 seconds 2018-03-01 18:48:26,057 INFO repeater task report_generator starting 14.3 seconds late 2018-03-01 18:48:29,780 INFO repeater task report_generator output: cruisename is cruisename is report_dir is report_dir is uhdas_dir is uhdas_dir is 0.0 sec : initial png rsync 0.0 sec : initial png rsync 0.0 sec : initial png rsync 0.0 sec : initial png rsync 1.0 sec : navplot: plot_rnav.py -s300 --noshow --title RB1801_C --outfile /home/data/RB1801_C/reports/nav_plot_all /home/data/RB1801_C/rbin/gpsnav/*.gps.rbin 1.0 sec : navplot: plot_rnav.py -s300 --noshow --title RB1801_C --outfile /home/data/RB1801_C/reports/nav_plot_all /home/data/RB1801_C/rbin/gpsnav/*.gps.rbin 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_topo.png /home/data/RB1801_C/reports/nav_plot_all_topoT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_topo.png /home/data/RB1801_C/reports/nav_plot_all_topoT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_txy.png /home/data/RB1801_C/reports/nav_plot_all_txyT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_txy.png /home/data/RB1801_C/reports/nav_plot_all_txyT.png 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75nb/png_archive/ /home/data/RB1801_C/reports/os75nb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75nb/png_archive/ /home/data/RB1801_C/reports/os75nb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75bb/png_archive/ /home/data/RB1801_C/reports/os75bb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75bb/png_archive/ /home/data/RB1801_C/reports/os75bb_pngarchive 0.0 sec : uhdas_overview: uhdas_info.py --overview --logfile /home/data/RB1801_C/reports/uhdas_overview.txt /home/data/RB1801_C 0.0 sec : uhdas_overview: uhdas_info.py --overview --logfile /home/data/RB1801_C/reports/uhdas_overview.txt /home/data/RB1801_C 0.0 sec : sonar_summary: sonar_summary.py --outfile /home/data/RB1801_C/reports/sonar_summary.txt --uhdas_dir /home/data/RB1801_C 0.0 sec : sonar_summary: sonar_summary.py --outfile /home/data/RB1801_C/reports/sonar_summary.txt --uhdas_dir /home/data/RB1801_C 0.0 sec : adcp_settings: uhdas_info.py --settings --logfile /home/data/RB1801_C/reports/ADCP_settings.txt /home/data/RB1801_C 0.0 sec : adcp_settings: uhdas_info.py --settings --logfile /home/data/RB1801_C/reports/ADCP_settings.txt /home/data/RB1801_C 0.0 sec : adcp_cals: uhdas_info.py --cals --logfile /home/data/RB1801_C/reports/ADCP_cals.txt /home/data/RB1801_C 0.0 sec : adcp_cals: uhdas_info.py --cals --logfile /home/data/RB1801_C/reports/ADCP_cals.txt /home/data/RB1801_C 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : hcorr_serial_plot: plot_posmv.py --cutoff 0.020 -s 180 -o /home/data/RB1801_C/reports/posmv_quality --noshow /home/data/RB1801_C 1.0 sec : hcorr_serial_plot: plot_posmv.py --cutoff 0.020 -s 180 -o /home/data/RB1801_C/reports/posmv_quality --noshow /home/data/RB1801_C 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_proc.py /home/data/RB1801_C/reports/RB1801_C_proc.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_proc.py /home/data/RB1801_C/reports/RB1801_C_proc.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_sensor.py /home/data/RB1801_C/reports/RB1801_C_sensor.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_sensor.py /home/data/RB1801_C/reports/RB1801_C_sensor.py.txt 3.0 seconds elapsed 3.0 seconds elapsed html page starts here: /home/data/RB1801_C/reports/index.html html page starts here: /home/data/RB1801_C/reports/index.html 2018-03-01 18:48:29,780 INFO repeater task report_generator ended after 3.7 seconds 2018-03-01 18:48:34,786 INFO repeater task os75nb_lastensq starting 12.8 seconds late 2018-03-01 18:48:36,766 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 18:48:36,766 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2018-03-01 18:48:36,766 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 18:48:12 2018-03-01 18:48:36,766 INFO repeater task os75nb_quick starting 5.1 seconds late 2018-03-01 18:48:39,032 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-03-01 18:48:39,032 INFO repeater task os75nb_quick ended after 2.3 seconds 2018-03-01 18:48:39,032 INFO repeater task os75nb_lastvec starting 7.4 seconds late 2018-03-01 18:48:39,367 INFO repeater task os75nb_lastvec ended after 0.3 seconds 2018-03-01 18:53:14,964 INFO repeater task os75nb_3dayplots starting 3.3 seconds late 2018-03-01 18:53:19,753 INFO repeater task os75nb_3dayplots output: zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-03-01 18:53:19,754 INFO repeater task os75nb_3dayplots ended after 4.8 seconds 2018-03-01 18:53:24,759 INFO repeater task os75nb_lastensq starting 2.8 seconds late 2018-03-01 18:53:26,703 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 18:53:26,703 INFO repeater task os75nb_lastensq ended after 1.9 seconds 2018-03-01 18:53:26,703 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 18:53:12 2018-03-01 18:53:41,736 INFO repeater task os75nb_quick starting 0.1 seconds late 2018-03-01 18:53:44,003 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-03-01 18:53:44,003 INFO repeater task os75nb_quick ended after 2.3 seconds 2018-03-01 18:53:44,003 INFO repeater task os75nb_lastvec starting 2.4 seconds late 2018-03-01 18:53:44,373 INFO repeater task os75nb_lastvec ended after 0.4 seconds 2018-03-01 18:58:14,944 INFO repeater task os75nb_3dayplots starting 3.3 seconds late 2018-03-01 18:58:19,839 INFO repeater task os75nb_3dayplots output: zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-03-01 18:58:19,839 INFO repeater task os75nb_3dayplots ended after 4.9 seconds 2018-03-01 18:58:24,846 INFO repeater task os75nb_lastensq starting 2.8 seconds late 2018-03-01 18:58:26,791 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 18:58:26,791 INFO repeater task os75nb_lastensq ended after 1.9 seconds 2018-03-01 18:58:26,792 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 18:58:12 2018-03-01 18:58:51,842 INFO repeater task os75nb_quick starting 0.2 seconds late 2018-03-01 18:58:54,120 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-03-01 18:58:54,120 INFO repeater task os75nb_quick ended after 2.3 seconds 2018-03-01 18:58:54,121 INFO repeater task os75nb_lastvec starting 2.5 seconds late 2018-03-01 18:58:54,485 INFO repeater task os75nb_lastvec ended after 0.4 seconds 2018-03-01 19:03:15,009 INFO repeater task os75nb_3dayplots starting 3.4 seconds late 2018-03-01 19:03:19,925 INFO repeater task os75nb_3dayplots output: zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-03-01 19:03:19,925 INFO repeater task os75nb_3dayplots ended after 4.9 seconds 2018-03-01 19:03:19,925 INFO repeater task os75nb_tsstats starting 8.3 seconds late 2018-03-01 19:03:20,526 INFO repeater task os75nb_tsstats output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 19:03:20,526 INFO repeater task os75nb_tsstats ended after 0.6 seconds 2018-03-01 19:03:20,526 INFO repeater task os75nb_10pings starting 8.9 seconds late 2018-03-01 19:03:20,627 INFO repeater task os75nb_10pings ended after 0.1 seconds 2018-03-01 19:03:20,627 INFO repeater task os75nb_beamplots starting 9.0 seconds late 2018-03-01 19:03:21,627 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /usr/local/currents/bin 2018-03-01 19:03:21,627 INFO repeater task os75nb_beamplots ended after 1.0 seconds 2018-03-01 19:03:21,627 INFO repeater task os75nb_beamplots starting 10.0 seconds late 2018-03-01 19:03:22,574 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /usr/local/currents/bin 2018-03-01 19:03:22,574 INFO repeater task os75nb_beamplots ended after 0.9 seconds 2018-03-01 19:03:22,574 INFO repeater task posmv_hcorrstats starting 10.8 seconds late 2018-03-01 19:03:23,487 INFO repeater task posmv_hcorrstats ended after 0.9 seconds 2018-03-01 19:03:23,487 INFO repeater task posmv_plotposmv starting 11.7 seconds late 2018-03-01 19:03:26,476 INFO repeater task posmv_plotposmv ended after 3.0 seconds 2018-03-01 19:03:26,477 INFO repeater task report_generator starting 14.7 seconds late 2018-03-01 19:03:30,202 INFO repeater task report_generator output: cruisename is cruisename is report_dir is report_dir is uhdas_dir is uhdas_dir is 0.0 sec : initial png rsync 0.0 sec : initial png rsync 0.0 sec : initial png rsync 0.0 sec : initial png rsync 1.0 sec : navplot: plot_rnav.py -s300 --noshow --title RB1801_C --outfile /home/data/RB1801_C/reports/nav_plot_all /home/data/RB1801_C/rbin/gpsnav/*.gps.rbin 1.0 sec : navplot: plot_rnav.py -s300 --noshow --title RB1801_C --outfile /home/data/RB1801_C/reports/nav_plot_all /home/data/RB1801_C/rbin/gpsnav/*.gps.rbin 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_topo.png /home/data/RB1801_C/reports/nav_plot_all_topoT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_topo.png /home/data/RB1801_C/reports/nav_plot_all_topoT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_txy.png /home/data/RB1801_C/reports/nav_plot_all_txyT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_txy.png /home/data/RB1801_C/reports/nav_plot_all_txyT.png 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75nb/png_archive/ /home/data/RB1801_C/reports/os75nb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75nb/png_archive/ /home/data/RB1801_C/reports/os75nb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75bb/png_archive/ /home/data/RB1801_C/reports/os75bb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75bb/png_archive/ /home/data/RB1801_C/reports/os75bb_pngarchive 0.0 sec : uhdas_overview: uhdas_info.py --overview --logfile /home/data/RB1801_C/reports/uhdas_overview.txt /home/data/RB1801_C 0.0 sec : uhdas_overview: uhdas_info.py --overview --logfile /home/data/RB1801_C/reports/uhdas_overview.txt /home/data/RB1801_C 0.0 sec : sonar_summary: sonar_summary.py --outfile /home/data/RB1801_C/reports/sonar_summary.txt --uhdas_dir /home/data/RB1801_C 0.0 sec : sonar_summary: sonar_summary.py --outfile /home/data/RB1801_C/reports/sonar_summary.txt --uhdas_dir /home/data/RB1801_C 0.0 sec : adcp_settings: uhdas_info.py --settings --logfile /home/data/RB1801_C/reports/ADCP_settings.txt /home/data/RB1801_C 0.0 sec : adcp_settings: uhdas_info.py --settings --logfile /home/data/RB1801_C/reports/ADCP_settings.txt /home/data/RB1801_C 0.0 sec : adcp_cals: uhdas_info.py --cals --logfile /home/data/RB1801_C/reports/ADCP_cals.txt /home/data/RB1801_C 0.0 sec : adcp_cals: uhdas_info.py --cals --logfile /home/data/RB1801_C/reports/ADCP_cals.txt /home/data/RB1801_C 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : hcorr_serial_plot: plot_posmv.py --cutoff 0.020 -s 180 -o /home/data/RB1801_C/reports/posmv_quality --noshow /home/data/RB1801_C 1.0 sec : hcorr_serial_plot: plot_posmv.py --cutoff 0.020 -s 180 -o /home/data/RB1801_C/reports/posmv_quality --noshow /home/data/RB1801_C 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_proc.py /home/data/RB1801_C/reports/RB1801_C_proc.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_proc.py /home/data/RB1801_C/reports/RB1801_C_proc.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_sensor.py /home/data/RB1801_C/reports/RB1801_C_sensor.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_sensor.py /home/data/RB1801_C/reports/RB1801_C_sensor.py.txt 3.0 seconds elapsed 3.0 seconds elapsed html page starts here: /home/data/RB1801_C/reports/index.html html page starts here: /home/data/RB1801_C/reports/index.html 2018-03-01 19:03:30,203 INFO repeater task report_generator ended after 3.7 seconds 2018-03-01 19:03:35,208 INFO repeater task os75nb_lastensq starting 13.2 seconds late 2018-03-01 19:03:37,179 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 19:03:37,179 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2018-03-01 19:03:37,179 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 19:03:12 2018-03-01 19:04:02,232 INFO repeater task os75nb_quick starting 0.6 seconds late 2018-03-01 19:04:04,469 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-03-01 19:04:04,469 INFO repeater task os75nb_quick ended after 2.2 seconds 2018-03-01 19:04:04,469 INFO repeater task os75nb_lastvec starting 2.8 seconds late 2018-03-01 19:04:04,816 INFO repeater task os75nb_lastvec ended after 0.3 seconds 2018-03-01 19:08:15,329 INFO repeater task os75nb_3dayplots starting 3.7 seconds late 2018-03-01 19:08:20,099 INFO repeater task os75nb_3dayplots output: zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-03-01 19:08:20,099 INFO repeater task os75nb_3dayplots ended after 4.8 seconds 2018-03-01 19:08:25,105 INFO repeater task os75nb_lastensq starting 3.1 seconds late 2018-03-01 19:08:27,098 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 19:08:27,098 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2018-03-01 19:08:27,098 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 19:08:12 2018-03-01 19:09:12,199 INFO repeater task os75nb_quick starting 0.6 seconds late 2018-03-01 19:09:14,469 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-03-01 19:09:14,469 INFO repeater task os75nb_quick ended after 2.3 seconds 2018-03-01 19:09:14,470 INFO repeater task os75nb_lastvec starting 2.8 seconds late 2018-03-01 19:09:14,827 INFO repeater task os75nb_lastvec ended after 0.4 seconds 2018-03-01 19:13:15,290 INFO repeater task os75nb_3dayplots starting 3.7 seconds late 2018-03-01 19:13:20,221 INFO repeater task os75nb_3dayplots output: zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-03-01 19:13:20,221 INFO repeater task os75nb_3dayplots ended after 4.9 seconds 2018-03-01 19:13:25,228 INFO repeater task os75nb_lastensq starting 3.2 seconds late 2018-03-01 19:13:27,177 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 19:13:27,177 INFO repeater task os75nb_lastensq ended after 1.9 seconds 2018-03-01 19:13:27,177 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 19:13:12 2018-03-01 19:14:22,296 INFO repeater task os75nb_quick starting 0.7 seconds late 2018-03-01 19:14:24,557 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-03-01 19:14:24,557 INFO repeater task os75nb_quick ended after 2.3 seconds 2018-03-01 19:14:24,557 INFO repeater task os75nb_lastvec starting 2.9 seconds late 2018-03-01 19:14:24,898 INFO repeater task os75nb_lastvec ended after 0.3 seconds 2018-03-01 19:18:15,392 INFO repeater task os75nb_3dayplots starting 3.8 seconds late 2018-03-01 19:18:20,394 INFO repeater task os75nb_3dayplots output: zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-03-01 19:18:20,394 INFO repeater task os75nb_3dayplots ended after 5.0 seconds 2018-03-01 19:18:20,394 INFO repeater task os75nb_tsstats starting 8.8 seconds late 2018-03-01 19:18:21,010 INFO repeater task os75nb_tsstats output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 19:18:21,010 INFO repeater task os75nb_tsstats ended after 0.6 seconds 2018-03-01 19:18:21,010 INFO repeater task os75nb_10pings starting 9.4 seconds late 2018-03-01 19:18:21,112 INFO repeater task os75nb_10pings ended after 0.1 seconds 2018-03-01 19:18:21,112 INFO repeater task os75nb_beamplots starting 9.5 seconds late 2018-03-01 19:18:22,080 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /usr/local/currents/bin 2018-03-01 19:18:22,080 INFO repeater task os75nb_beamplots ended after 1.0 seconds 2018-03-01 19:18:22,080 INFO repeater task os75nb_beamplots starting 10.4 seconds late 2018-03-01 19:18:23,045 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /usr/local/currents/bin 2018-03-01 19:18:23,046 INFO repeater task os75nb_beamplots ended after 1.0 seconds 2018-03-01 19:18:23,046 INFO repeater task posmv_hcorrstats starting 11.2 seconds late 2018-03-01 19:18:23,934 INFO repeater task posmv_hcorrstats ended after 0.9 seconds 2018-03-01 19:18:23,934 INFO repeater task posmv_plotposmv starting 12.1 seconds late 2018-03-01 19:18:26,979 INFO repeater task posmv_plotposmv ended after 3.0 seconds 2018-03-01 19:18:26,980 INFO repeater task report_generator starting 15.2 seconds late 2018-03-01 19:18:30,686 INFO repeater task report_generator output: cruisename is cruisename is report_dir is report_dir is uhdas_dir is uhdas_dir is 0.0 sec : initial png rsync 0.0 sec : initial png rsync 0.0 sec : initial png rsync 0.0 sec : initial png rsync 1.0 sec : navplot: plot_rnav.py -s300 --noshow --title RB1801_C --outfile /home/data/RB1801_C/reports/nav_plot_all /home/data/RB1801_C/rbin/gpsnav/*.gps.rbin 1.0 sec : navplot: plot_rnav.py -s300 --noshow --title RB1801_C --outfile /home/data/RB1801_C/reports/nav_plot_all /home/data/RB1801_C/rbin/gpsnav/*.gps.rbin 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_topo.png /home/data/RB1801_C/reports/nav_plot_all_topoT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_topo.png /home/data/RB1801_C/reports/nav_plot_all_topoT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_txy.png /home/data/RB1801_C/reports/nav_plot_all_txyT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_txy.png /home/data/RB1801_C/reports/nav_plot_all_txyT.png 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75nb/png_archive/ /home/data/RB1801_C/reports/os75nb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75nb/png_archive/ /home/data/RB1801_C/reports/os75nb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75bb/png_archive/ /home/data/RB1801_C/reports/os75bb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75bb/png_archive/ /home/data/RB1801_C/reports/os75bb_pngarchive 0.0 sec : uhdas_overview: uhdas_info.py --overview --logfile /home/data/RB1801_C/reports/uhdas_overview.txt /home/data/RB1801_C 0.0 sec : uhdas_overview: uhdas_info.py --overview --logfile /home/data/RB1801_C/reports/uhdas_overview.txt /home/data/RB1801_C 0.0 sec : sonar_summary: sonar_summary.py --outfile /home/data/RB1801_C/reports/sonar_summary.txt --uhdas_dir /home/data/RB1801_C 0.0 sec : sonar_summary: sonar_summary.py --outfile /home/data/RB1801_C/reports/sonar_summary.txt --uhdas_dir /home/data/RB1801_C 0.0 sec : adcp_settings: uhdas_info.py --settings --logfile /home/data/RB1801_C/reports/ADCP_settings.txt /home/data/RB1801_C 0.0 sec : adcp_settings: uhdas_info.py --settings --logfile /home/data/RB1801_C/reports/ADCP_settings.txt /home/data/RB1801_C 0.0 sec : adcp_cals: uhdas_info.py --cals --logfile /home/data/RB1801_C/reports/ADCP_cals.txt /home/data/RB1801_C 0.0 sec : adcp_cals: uhdas_info.py --cals --logfile /home/data/RB1801_C/reports/ADCP_cals.txt /home/data/RB1801_C 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : hcorr_serial_plot: plot_posmv.py --cutoff 0.020 -s 180 -o /home/data/RB1801_C/reports/posmv_quality --noshow /home/data/RB1801_C 1.0 sec : hcorr_serial_plot: plot_posmv.py --cutoff 0.020 -s 180 -o /home/data/RB1801_C/reports/posmv_quality --noshow /home/data/RB1801_C 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_proc.py /home/data/RB1801_C/reports/RB1801_C_proc.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_proc.py /home/data/RB1801_C/reports/RB1801_C_proc.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_sensor.py /home/data/RB1801_C/reports/RB1801_C_sensor.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_sensor.py /home/data/RB1801_C/reports/RB1801_C_sensor.py.txt 3.0 seconds elapsed 3.0 seconds elapsed html page starts here: /home/data/RB1801_C/reports/index.html html page starts here: /home/data/RB1801_C/reports/index.html 2018-03-01 19:18:30,686 INFO repeater task report_generator ended after 3.7 seconds 2018-03-01 19:18:35,688 INFO repeater task os75nb_lastensq starting 13.7 seconds late 2018-03-01 19:18:37,742 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 19:18:37,742 INFO repeater task os75nb_lastensq ended after 2.1 seconds 2018-03-01 19:18:37,742 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 19:18:12 2018-03-01 19:19:32,860 INFO repeater task os75nb_quick starting 1.2 seconds late 2018-03-01 19:19:35,135 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-03-01 19:19:35,135 INFO repeater task os75nb_quick ended after 2.3 seconds 2018-03-01 19:19:35,135 INFO repeater task os75nb_lastvec starting 3.5 seconds late 2018-03-01 19:19:35,497 INFO repeater task os75nb_lastvec ended after 0.4 seconds 2018-03-01 19:23:15,870 INFO repeater task os75nb_3dayplots starting 4.2 seconds late 2018-03-01 19:23:20,797 INFO repeater task os75nb_3dayplots output: zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-03-01 19:23:20,797 INFO repeater task os75nb_3dayplots ended after 4.9 seconds 2018-03-01 19:23:25,800 INFO repeater task os75nb_lastensq starting 3.8 seconds late 2018-03-01 19:23:27,788 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 19:23:27,788 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2018-03-01 19:23:27,788 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 19:23:12 2018-03-01 19:24:42,932 INFO repeater task os75nb_quick starting 1.3 seconds late 2018-03-01 19:24:45,231 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-03-01 19:24:45,231 INFO repeater task os75nb_quick ended after 2.3 seconds 2018-03-01 19:24:45,234 INFO repeater task os75nb_lastvec starting 3.6 seconds late 2018-03-01 19:24:45,589 INFO repeater task os75nb_lastvec ended after 0.4 seconds 2018-03-01 19:28:15,959 INFO repeater task os75nb_3dayplots starting 4.3 seconds late 2018-03-01 19:28:20,990 INFO repeater task os75nb_3dayplots output: zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-03-01 19:28:20,991 INFO repeater task os75nb_3dayplots ended after 5.0 seconds 2018-03-01 19:28:25,997 INFO repeater task os75nb_lastensq starting 4.0 seconds late 2018-03-01 19:28:27,962 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 19:28:27,962 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2018-03-01 19:28:27,962 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 19:28:12 2018-03-01 19:29:53,122 INFO repeater task os75nb_quick starting 1.5 seconds late 2018-03-01 19:29:55,390 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-03-01 19:29:55,390 INFO repeater task os75nb_quick ended after 2.3 seconds 2018-03-01 19:29:55,390 INFO repeater task os75nb_lastvec starting 3.8 seconds late 2018-03-01 19:29:55,724 INFO repeater task os75nb_lastvec ended after 0.3 seconds 2018-03-01 19:33:16,157 INFO repeater task os75nb_3dayplots starting 4.5 seconds late 2018-03-01 19:33:21,166 INFO repeater task os75nb_3dayplots output: zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-03-01 19:33:21,166 INFO repeater task os75nb_3dayplots ended after 5.0 seconds 2018-03-01 19:33:21,166 INFO repeater task os75nb_tsstats starting 9.5 seconds late 2018-03-01 19:33:21,756 INFO repeater task os75nb_tsstats output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 19:33:21,756 INFO repeater task os75nb_tsstats ended after 0.6 seconds 2018-03-01 19:33:21,756 INFO repeater task os75nb_10pings starting 10.1 seconds late 2018-03-01 19:33:21,852 INFO repeater task os75nb_10pings ended after 0.1 seconds 2018-03-01 19:33:21,852 INFO repeater task os75nb_beamplots starting 10.2 seconds late 2018-03-01 19:33:22,828 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /usr/local/currents/bin 2018-03-01 19:33:22,828 INFO repeater task os75nb_beamplots ended after 1.0 seconds 2018-03-01 19:33:22,828 INFO repeater task os75nb_beamplots starting 11.2 seconds late 2018-03-01 19:33:23,770 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /usr/local/currents/bin 2018-03-01 19:33:23,770 INFO repeater task os75nb_beamplots ended after 0.9 seconds 2018-03-01 19:33:23,770 INFO repeater task posmv_hcorrstats starting 12.0 seconds late 2018-03-01 19:33:24,698 INFO repeater task posmv_hcorrstats ended after 0.9 seconds 2018-03-01 19:33:24,698 INFO repeater task posmv_plotposmv starting 12.9 seconds late 2018-03-01 19:33:27,710 INFO repeater task posmv_plotposmv ended after 3.0 seconds 2018-03-01 19:33:27,710 INFO repeater task report_generator starting 15.9 seconds late 2018-03-01 19:33:31,445 INFO repeater task report_generator output: cruisename is cruisename is report_dir is report_dir is uhdas_dir is uhdas_dir is 0.0 sec : initial png rsync 0.0 sec : initial png rsync 0.0 sec : initial png rsync 0.0 sec : initial png rsync 1.0 sec : navplot: plot_rnav.py -s300 --noshow --title RB1801_C --outfile /home/data/RB1801_C/reports/nav_plot_all /home/data/RB1801_C/rbin/gpsnav/*.gps.rbin 1.0 sec : navplot: plot_rnav.py -s300 --noshow --title RB1801_C --outfile /home/data/RB1801_C/reports/nav_plot_all /home/data/RB1801_C/rbin/gpsnav/*.gps.rbin 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_topo.png /home/data/RB1801_C/reports/nav_plot_all_topoT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_topo.png /home/data/RB1801_C/reports/nav_plot_all_topoT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_txy.png /home/data/RB1801_C/reports/nav_plot_all_txyT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_txy.png /home/data/RB1801_C/reports/nav_plot_all_txyT.png 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75nb/png_archive/ /home/data/RB1801_C/reports/os75nb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75nb/png_archive/ /home/data/RB1801_C/reports/os75nb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75bb/png_archive/ /home/data/RB1801_C/reports/os75bb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75bb/png_archive/ /home/data/RB1801_C/reports/os75bb_pngarchive 0.0 sec : uhdas_overview: uhdas_info.py --overview --logfile /home/data/RB1801_C/reports/uhdas_overview.txt /home/data/RB1801_C 0.0 sec : uhdas_overview: uhdas_info.py --overview --logfile /home/data/RB1801_C/reports/uhdas_overview.txt /home/data/RB1801_C 0.0 sec : sonar_summary: sonar_summary.py --outfile /home/data/RB1801_C/reports/sonar_summary.txt --uhdas_dir /home/data/RB1801_C 0.0 sec : sonar_summary: sonar_summary.py --outfile /home/data/RB1801_C/reports/sonar_summary.txt --uhdas_dir /home/data/RB1801_C 0.0 sec : adcp_settings: uhdas_info.py --settings --logfile /home/data/RB1801_C/reports/ADCP_settings.txt /home/data/RB1801_C 0.0 sec : adcp_settings: uhdas_info.py --settings --logfile /home/data/RB1801_C/reports/ADCP_settings.txt /home/data/RB1801_C 0.0 sec : adcp_cals: uhdas_info.py --cals --logfile /home/data/RB1801_C/reports/ADCP_cals.txt /home/data/RB1801_C 0.0 sec : adcp_cals: uhdas_info.py --cals --logfile /home/data/RB1801_C/reports/ADCP_cals.txt /home/data/RB1801_C 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : hcorr_serial_plot: plot_posmv.py --cutoff 0.020 -s 180 -o /home/data/RB1801_C/reports/posmv_quality --noshow /home/data/RB1801_C 1.0 sec : hcorr_serial_plot: plot_posmv.py --cutoff 0.020 -s 180 -o /home/data/RB1801_C/reports/posmv_quality --noshow /home/data/RB1801_C 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_proc.py /home/data/RB1801_C/reports/RB1801_C_proc.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_proc.py /home/data/RB1801_C/reports/RB1801_C_proc.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_sensor.py /home/data/RB1801_C/reports/RB1801_C_sensor.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_sensor.py /home/data/RB1801_C/reports/RB1801_C_sensor.py.txt 3.0 seconds elapsed 3.0 seconds elapsed html page starts here: /home/data/RB1801_C/reports/index.html html page starts here: /home/data/RB1801_C/reports/index.html 2018-03-01 19:33:31,445 INFO repeater task report_generator ended after 3.7 seconds 2018-03-01 19:33:36,447 INFO repeater task os75nb_lastensq starting 14.4 seconds late 2018-03-01 19:33:38,380 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 19:33:38,380 INFO repeater task os75nb_lastensq ended after 1.9 seconds 2018-03-01 19:33:38,380 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 19:33:12 2018-03-01 19:35:03,529 INFO repeater task os75nb_quick starting 1.9 seconds late 2018-03-01 19:35:05,798 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-03-01 19:35:05,798 INFO repeater task os75nb_quick ended after 2.3 seconds 2018-03-01 19:35:05,798 INFO repeater task os75nb_lastvec starting 4.2 seconds late 2018-03-01 19:35:06,138 INFO repeater task os75nb_lastvec ended after 0.3 seconds 2018-03-01 19:38:16,521 INFO repeater task os75nb_3dayplots starting 4.9 seconds late 2018-03-01 19:38:21,344 INFO repeater task os75nb_3dayplots output: zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-03-01 19:38:21,344 INFO repeater task os75nb_3dayplots ended after 4.8 seconds 2018-03-01 19:38:26,347 INFO repeater task os75nb_lastensq starting 4.3 seconds late 2018-03-01 19:38:28,300 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 19:38:28,300 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2018-03-01 19:38:28,300 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 19:38:12 2018-03-01 19:40:13,525 INFO repeater task os75nb_quick starting 1.9 seconds late 2018-03-01 19:40:15,788 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-03-01 19:40:15,788 INFO repeater task os75nb_quick ended after 2.3 seconds 2018-03-01 19:40:15,788 INFO repeater task os75nb_lastvec starting 4.2 seconds late 2018-03-01 19:40:16,129 INFO repeater task os75nb_lastvec ended after 0.3 seconds 2018-03-01 19:43:16,481 INFO repeater task os75nb_3dayplots starting 4.8 seconds late 2018-03-01 19:43:21,455 INFO repeater task os75nb_3dayplots output: zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-03-01 19:43:21,455 INFO repeater task os75nb_3dayplots ended after 5.0 seconds 2018-03-01 19:43:26,462 INFO repeater task os75nb_lastensq starting 4.5 seconds late 2018-03-01 19:43:28,462 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 19:43:28,462 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2018-03-01 19:43:28,462 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 19:43:12 2018-03-01 19:45:23,702 INFO repeater task os75nb_quick starting 2.1 seconds late 2018-03-01 19:45:25,979 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-03-01 19:45:25,979 INFO repeater task os75nb_quick ended after 2.3 seconds 2018-03-01 19:45:25,980 INFO repeater task os75nb_lastvec starting 4.3 seconds late 2018-03-01 19:45:26,324 INFO repeater task os75nb_lastvec ended after 0.3 seconds 2018-03-01 19:48:11,675 INFO repeater task os75nb_3dayplots starting 0.0 seconds late 2018-03-01 19:48:16,569 INFO repeater task os75nb_3dayplots output: zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-03-01 19:48:16,569 INFO repeater task os75nb_3dayplots ended after 4.9 seconds 2018-03-01 19:48:16,570 INFO repeater task os75nb_tsstats starting 4.9 seconds late 2018-03-01 19:48:17,192 INFO repeater task os75nb_tsstats output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 19:48:17,192 INFO repeater task os75nb_tsstats ended after 0.6 seconds 2018-03-01 19:48:17,192 INFO repeater task os75nb_10pings starting 5.6 seconds late 2018-03-01 19:48:17,296 INFO repeater task os75nb_10pings ended after 0.1 seconds 2018-03-01 19:48:17,296 INFO repeater task os75nb_beamplots starting 5.7 seconds late 2018-03-01 19:48:18,245 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /usr/local/currents/bin 2018-03-01 19:48:18,245 INFO repeater task os75nb_beamplots ended after 0.9 seconds 2018-03-01 19:48:18,246 INFO repeater task os75nb_beamplots starting 6.6 seconds late 2018-03-01 19:48:19,222 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /usr/local/currents/bin 2018-03-01 19:48:19,223 INFO repeater task os75nb_beamplots ended after 1.0 seconds 2018-03-01 19:48:19,223 INFO repeater task posmv_hcorrstats starting 7.4 seconds late 2018-03-01 19:48:20,108 INFO repeater task posmv_hcorrstats ended after 0.9 seconds 2018-03-01 19:48:20,108 INFO repeater task posmv_plotposmv starting 8.3 seconds late 2018-03-01 19:48:23,139 INFO repeater task posmv_plotposmv ended after 3.0 seconds 2018-03-01 19:48:23,139 INFO repeater task report_generator starting 11.3 seconds late 2018-03-01 19:48:26,845 INFO repeater task report_generator output: cruisename is cruisename is report_dir is report_dir is uhdas_dir is uhdas_dir is 0.0 sec : initial png rsync 0.0 sec : initial png rsync 0.0 sec : initial png rsync 0.0 sec : initial png rsync 1.0 sec : navplot: plot_rnav.py -s300 --noshow --title RB1801_C --outfile /home/data/RB1801_C/reports/nav_plot_all /home/data/RB1801_C/rbin/gpsnav/*.gps.rbin 1.0 sec : navplot: plot_rnav.py -s300 --noshow --title RB1801_C --outfile /home/data/RB1801_C/reports/nav_plot_all /home/data/RB1801_C/rbin/gpsnav/*.gps.rbin 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_topo.png /home/data/RB1801_C/reports/nav_plot_all_topoT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_topo.png /home/data/RB1801_C/reports/nav_plot_all_topoT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_txy.png /home/data/RB1801_C/reports/nav_plot_all_txyT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_txy.png /home/data/RB1801_C/reports/nav_plot_all_txyT.png 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75nb/png_archive/ /home/data/RB1801_C/reports/os75nb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75nb/png_archive/ /home/data/RB1801_C/reports/os75nb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75bb/png_archive/ /home/data/RB1801_C/reports/os75bb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75bb/png_archive/ /home/data/RB1801_C/reports/os75bb_pngarchive 0.0 sec : uhdas_overview: uhdas_info.py --overview --logfile /home/data/RB1801_C/reports/uhdas_overview.txt /home/data/RB1801_C 0.0 sec : uhdas_overview: uhdas_info.py --overview --logfile /home/data/RB1801_C/reports/uhdas_overview.txt /home/data/RB1801_C 0.0 sec : sonar_summary: sonar_summary.py --outfile /home/data/RB1801_C/reports/sonar_summary.txt --uhdas_dir /home/data/RB1801_C 0.0 sec : sonar_summary: sonar_summary.py --outfile /home/data/RB1801_C/reports/sonar_summary.txt --uhdas_dir /home/data/RB1801_C 0.0 sec : adcp_settings: uhdas_info.py --settings --logfile /home/data/RB1801_C/reports/ADCP_settings.txt /home/data/RB1801_C 0.0 sec : adcp_settings: uhdas_info.py --settings --logfile /home/data/RB1801_C/reports/ADCP_settings.txt /home/data/RB1801_C 0.0 sec : adcp_cals: uhdas_info.py --cals --logfile /home/data/RB1801_C/reports/ADCP_cals.txt /home/data/RB1801_C 0.0 sec : adcp_cals: uhdas_info.py --cals --logfile /home/data/RB1801_C/reports/ADCP_cals.txt /home/data/RB1801_C 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : hcorr_serial_plot: plot_posmv.py --cutoff 0.020 -s 180 -o /home/data/RB1801_C/reports/posmv_quality --noshow /home/data/RB1801_C 1.0 sec : hcorr_serial_plot: plot_posmv.py --cutoff 0.020 -s 180 -o /home/data/RB1801_C/reports/posmv_quality --noshow /home/data/RB1801_C 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_proc.py /home/data/RB1801_C/reports/RB1801_C_proc.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_proc.py /home/data/RB1801_C/reports/RB1801_C_proc.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_sensor.py /home/data/RB1801_C/reports/RB1801_C_sensor.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_sensor.py /home/data/RB1801_C/reports/RB1801_C_sensor.py.txt 3.0 seconds elapsed 3.0 seconds elapsed html page starts here: /home/data/RB1801_C/reports/index.html html page starts here: /home/data/RB1801_C/reports/index.html 2018-03-01 19:48:26,845 INFO repeater task report_generator ended after 3.7 seconds 2018-03-01 19:48:31,851 INFO repeater task os75nb_lastensq starting 9.9 seconds late 2018-03-01 19:48:33,806 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 19:48:33,806 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2018-03-01 19:48:33,807 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 19:48:12 2018-03-01 19:50:34,066 INFO repeater task os75nb_quick starting 2.4 seconds late 2018-03-01 19:50:36,324 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-03-01 19:50:36,324 INFO repeater task os75nb_quick ended after 2.3 seconds 2018-03-01 19:50:36,324 INFO repeater task os75nb_lastvec starting 4.7 seconds late 2018-03-01 19:50:36,699 INFO repeater task os75nb_lastvec ended after 0.4 seconds 2018-03-01 19:53:12,000 INFO repeater task os75nb_3dayplots starting 0.4 seconds late 2018-03-01 19:53:16,939 INFO repeater task os75nb_3dayplots output: zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-03-01 19:53:16,939 INFO repeater task os75nb_3dayplots ended after 4.9 seconds 2018-03-01 19:53:26,957 INFO repeater task os75nb_lastensq starting 5.0 seconds late 2018-03-01 19:53:28,898 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 19:53:28,898 INFO repeater task os75nb_lastensq ended after 1.9 seconds 2018-03-01 19:53:28,898 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 19:53:12 2018-03-01 19:55:44,159 INFO repeater task os75nb_quick starting 2.5 seconds late 2018-03-01 19:55:46,433 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-03-01 19:55:46,433 INFO repeater task os75nb_quick ended after 2.3 seconds 2018-03-01 19:55:46,433 INFO repeater task os75nb_lastvec starting 4.8 seconds late 2018-03-01 19:55:46,787 INFO repeater task os75nb_lastvec ended after 0.4 seconds 2018-03-01 19:58:12,105 INFO repeater task os75nb_3dayplots starting 0.5 seconds late 2018-03-01 19:58:16,930 INFO repeater task os75nb_3dayplots output: zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-03-01 19:58:16,930 INFO repeater task os75nb_3dayplots ended after 4.8 seconds 2018-03-01 19:58:26,949 INFO repeater task os75nb_lastensq starting 4.9 seconds late 2018-03-01 19:58:28,889 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 19:58:28,889 INFO repeater task os75nb_lastensq ended after 1.9 seconds 2018-03-01 19:58:28,890 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 19:58:12 2018-03-01 20:00:54,180 INFO repeater task os75nb_quick starting 2.5 seconds late 2018-03-01 20:00:56,458 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-03-01 20:00:56,458 INFO repeater task os75nb_quick ended after 2.3 seconds 2018-03-01 20:00:56,459 INFO repeater task os75nb_lastvec starting 4.8 seconds late 2018-03-01 20:00:56,806 INFO repeater task os75nb_lastvec ended after 0.3 seconds 2018-03-01 20:03:12,089 INFO repeater task os75nb_3dayplots starting 0.5 seconds late 2018-03-01 20:03:16,943 INFO repeater task os75nb_3dayplots output: zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-03-01 20:03:16,943 INFO repeater task os75nb_3dayplots ended after 4.9 seconds 2018-03-01 20:03:16,943 INFO repeater task os75nb_tsstats starting 5.3 seconds late 2018-03-01 20:03:17,561 INFO repeater task os75nb_tsstats output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:1118: RuntimeWarning: overflow encountered in true_divide result = self.f(da, db, *args, **kwargs) /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 20:03:17,561 INFO repeater task os75nb_tsstats ended after 0.6 seconds 2018-03-01 20:03:17,561 INFO repeater task os75nb_10pings starting 5.9 seconds late 2018-03-01 20:03:17,656 INFO repeater task os75nb_10pings ended after 0.1 seconds 2018-03-01 20:03:17,656 INFO repeater task os75nb_beamplots starting 6.0 seconds late 2018-03-01 20:03:18,621 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /usr/local/currents/bin 2018-03-01 20:03:18,621 INFO repeater task os75nb_beamplots ended after 1.0 seconds 2018-03-01 20:03:18,621 INFO repeater task os75nb_beamplots starting 7.0 seconds late 2018-03-01 20:03:19,593 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /usr/local/currents/bin 2018-03-01 20:03:19,594 INFO repeater task os75nb_beamplots ended after 1.0 seconds 2018-03-01 20:03:19,594 INFO repeater task posmv_hcorrstats starting 7.8 seconds late 2018-03-01 20:03:20,480 INFO repeater task posmv_hcorrstats ended after 0.9 seconds 2018-03-01 20:03:20,480 INFO repeater task posmv_plotposmv starting 8.7 seconds late 2018-03-01 20:03:23,394 INFO repeater task posmv_plotposmv ended after 2.9 seconds 2018-03-01 20:03:23,395 INFO repeater task report_generator starting 11.6 seconds late 2018-03-01 20:03:27,094 INFO repeater task report_generator output: cruisename is cruisename is report_dir is report_dir is uhdas_dir is uhdas_dir is 0.0 sec : initial png rsync 0.0 sec : initial png rsync 0.0 sec : initial png rsync 0.0 sec : initial png rsync 1.0 sec : navplot: plot_rnav.py -s300 --noshow --title RB1801_C --outfile /home/data/RB1801_C/reports/nav_plot_all /home/data/RB1801_C/rbin/gpsnav/*.gps.rbin 1.0 sec : navplot: plot_rnav.py -s300 --noshow --title RB1801_C --outfile /home/data/RB1801_C/reports/nav_plot_all /home/data/RB1801_C/rbin/gpsnav/*.gps.rbin 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_topo.png /home/data/RB1801_C/reports/nav_plot_all_topoT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_topo.png /home/data/RB1801_C/reports/nav_plot_all_topoT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_txy.png /home/data/RB1801_C/reports/nav_plot_all_txyT.png 0.0 sec : navplot: convert -resize 200 /home/data/RB1801_C/reports/nav_plot_all_txy.png /home/data/RB1801_C/reports/nav_plot_all_txyT.png 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75nb/png_archive/ /home/data/RB1801_C/reports/os75nb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75nb/png_archive/ /home/data/RB1801_C/reports/os75nb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75bb/png_archive/ /home/data/RB1801_C/reports/os75bb_pngarchive 0.0 sec : png_archive: rsync -a /home/data/RB1801_C/proc/os75bb/png_archive/ /home/data/RB1801_C/reports/os75bb_pngarchive 0.0 sec : uhdas_overview: uhdas_info.py --overview --logfile /home/data/RB1801_C/reports/uhdas_overview.txt /home/data/RB1801_C 0.0 sec : uhdas_overview: uhdas_info.py --overview --logfile /home/data/RB1801_C/reports/uhdas_overview.txt /home/data/RB1801_C 0.0 sec : sonar_summary: sonar_summary.py --outfile /home/data/RB1801_C/reports/sonar_summary.txt --uhdas_dir /home/data/RB1801_C 0.0 sec : sonar_summary: sonar_summary.py --outfile /home/data/RB1801_C/reports/sonar_summary.txt --uhdas_dir /home/data/RB1801_C 0.0 sec : adcp_settings: uhdas_info.py --settings --logfile /home/data/RB1801_C/reports/ADCP_settings.txt /home/data/RB1801_C 0.0 sec : adcp_settings: uhdas_info.py --settings --logfile /home/data/RB1801_C/reports/ADCP_settings.txt /home/data/RB1801_C 0.0 sec : adcp_cals: uhdas_info.py --cals --logfile /home/data/RB1801_C/reports/ADCP_cals.txt /home/data/RB1801_C 0.0 sec : adcp_cals: uhdas_info.py --cals --logfile /home/data/RB1801_C/reports/ADCP_cals.txt /home/data/RB1801_C 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : ens_hcorr: plot_enshcorr.py --infile /home/data/RB1801_C/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1801_C/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv 1.0 sec : hcorr_serial_plot: plot_posmv.py --cutoff 0.020 -s 182 -o /home/data/RB1801_C/reports/posmv_quality --noshow /home/data/RB1801_C 1.0 sec : hcorr_serial_plot: plot_posmv.py --cutoff 0.020 -s 182 -o /home/data/RB1801_C/reports/posmv_quality --noshow /home/data/RB1801_C 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_proc.py /home/data/RB1801_C/reports/RB1801_C_proc.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_proc.py /home/data/RB1801_C/reports/RB1801_C_proc.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_sensor.py /home/data/RB1801_C/reports/RB1801_C_sensor.py.txt 0.0 sec : pycfg: cp -p /home/data/RB1801_C/raw/config/RB1801_C_sensor.py /home/data/RB1801_C/reports/RB1801_C_sensor.py.txt 3.0 seconds elapsed 3.0 seconds elapsed html page starts here: /home/data/RB1801_C/reports/index.html html page starts here: /home/data/RB1801_C/reports/index.html 2018-03-01 20:03:27,095 INFO repeater task report_generator ended after 3.7 seconds 2018-03-01 20:03:32,096 INFO repeater task os75nb_lastensq starting 10.1 seconds late 2018-03-01 20:03:34,047 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 20:03:34,047 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2018-03-01 20:03:34,048 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 20:03:12 2018-03-01 20:06:04,366 INFO repeater task os75nb_quick starting 2.7 seconds late 2018-03-01 20:06:06,623 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-03-01 20:06:06,624 INFO repeater task os75nb_quick ended after 2.3 seconds 2018-03-01 20:06:06,624 INFO repeater task os75nb_lastvec starting 5.0 seconds late 2018-03-01 20:06:06,969 INFO repeater task os75nb_lastvec ended after 0.3 seconds 2018-03-01 20:08:12,240 INFO repeater task os75nb_3dayplots starting 0.6 seconds late 2018-03-01 20:08:17,268 INFO repeater task os75nb_3dayplots output: zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-03-01 20:08:17,268 INFO repeater task os75nb_3dayplots ended after 5.0 seconds 2018-03-01 20:08:22,275 INFO repeater task os75nb_lastensq starting 0.3 seconds late 2018-03-01 20:08:24,220 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 20:08:24,220 INFO repeater task os75nb_lastensq ended after 1.9 seconds 2018-03-01 20:08:24,220 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 20:08:12 2018-03-01 20:11:14,573 INFO repeater task os75nb_quick starting 2.9 seconds late 2018-03-01 20:11:16,844 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-03-01 20:11:16,844 INFO repeater task os75nb_quick ended after 2.3 seconds 2018-03-01 20:11:16,845 INFO repeater task os75nb_lastvec starting 5.2 seconds late 2018-03-01 20:11:17,202 INFO repeater task os75nb_lastvec ended after 0.4 seconds 2018-03-01 20:13:12,434 INFO repeater task os75nb_3dayplots starting 0.8 seconds late 2018-03-01 20:13:17,393 INFO repeater task os75nb_3dayplots output: zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-03-01 20:13:17,393 INFO repeater task os75nb_3dayplots ended after 5.0 seconds 2018-03-01 20:13:22,399 INFO repeater task os75nb_lastensq starting 0.4 seconds late 2018-03-01 20:13:24,342 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-03-01 20:13:24,342 INFO repeater task os75nb_lastensq ended after 1.9 seconds 2018-03-01 20:13:24,342 INFO repeater task os75nb_lastensq: Time from /home/data/RB1801_C/proc/os75nb/load/wrote_ens_time: 2018/03/01 20:13:12 2018-03-01 20:14:46,369 INFO Translate translate exiting, hdg /home/data/RB1801_C/rbin/gyro2 2018-03-01 20:14:46,397 INFO Translate translate exiting, pmv /home/data/RB1801_C/rbin/posmv 2018-03-01 20:14:46,439 INFO Translate translate exiting, gps /home/data/RB1801_C/rbin/gpsnav 2018-03-01 20:14:46,439 INFO Translate translate exiting, hdg /home/data/RB1801_C/rbin/gyro 2018-03-01 20:14:46,441 INFO Translate translate exiting, gps /home/data/RB1801_C/rbin/posmv 2018-03-01 20:14:49,536 INFO root cleanup_figs not_logging 2018-03-01 20:14:49,549 INFO root Exiting DAS_while_logging.py 2018-03-07 19:50:23,671 INFO root Starting DAS_while_logging.py 2018-03-07 19:50:23,690 INFO root Cruiseid: RB1802_CAL 2018-03-07 19:50:23,702 INFO root starting run method 2018-03-07 19:50:23,702 INFO root speedlog_stopflagfile: /home/adcp/flags/DAS_speedlog.stop 2018-03-07 19:50:23,702 INFO root speedlog_runflagfile: /home/adcp/flags/DAS_speedlog.running 2018-03-07 19:50:23,703 INFO root speedlog command is /usr/local/currents/bin/DAS_speedlog.py & 2018-03-07 19:50:23,904 INFO Translate gyro2 hdg 1 2018-03-07 19:50:23,905 INFO Translate 2018-03-07 19:50:23,905 INFO Translate gyro hdg 1 2018-03-07 19:50:23,905 INFO Translate 2018-03-07 19:50:23,905 INFO Translate gpsnav gps 1 2018-03-07 19:50:23,905 INFO Translate 2018-03-07 19:50:23,906 INFO Translate posmv gps 1 2018-03-07 19:50:23,906 INFO Translate 2018-03-07 19:50:23,906 INFO Translate posmv pmv 0 2018-03-07 19:50:23,906 INFO Translate 2018-03-07 19:50:23,909 INFO root active_procdirnames: ['os75bb', 'os75nb'] 2018-03-07 19:50:23,910 INFO repeater PeriodicSystem: os75bb_lastensq interval is 310 seconds cd /home/adcp/uhdas_tmp; run_lastensq.py -d os75bb --update_pygbin --averages --plotens_mpl --kt_vecprof --pingwarnN 30 --ktsdir 2018-03-07 19:50:23,912 INFO repeater PeriodicSystem: os75bb_quick interval is 310 seconds cd /home/adcp/uhdas_tmp; run_quick.py -d os75bb 2018-03-07 19:50:23,914 INFO repeater PeriodicSystem: os75bb_lastvec interval is 310 seconds cd /home/adcp/uhdas_tmp; run_lastfew_vec.py -d os75bb 2018-03-07 19:50:23,914 INFO repeater PeriodicSystem: os75bb_3dayplots interval is 300 seconds cd /home/adcp/uhdas_tmp; run_3dayplots_mpl.py -d os75bb --plot_amp 2018-03-07 19:50:23,915 INFO repeater PeriodicSystem: os75bb_tsstats interval is 900 seconds cd /home/adcp/uhdas_tmp; run_plot_tsstats.py os75bb 2018-03-07 19:50:23,916 INFO repeater PeriodicSystem: os75bb_10pings interval is 900 seconds cd /home/adcp/uhdas_tmp; run_grab_lastpings.py -d os75bb 2018-03-07 19:50:23,916 INFO repeater PeriodicSystem: os75bb_beamplots interval is 900 seconds cd /home/adcp/uhdas_tmp; plot_beamdiagnostics.py -m 20 -d os75bb --savefigs --webcopy -p scattering 2018-03-07 19:50:23,916 INFO repeater PeriodicSystem: os75bb_beamplots interval is 900 seconds cd /home/adcp/uhdas_tmp; plot_beamdiagnostics.py -m 20 -d os75bb --savefigs --webcopy -p velocity 2018-03-07 19:50:23,916 INFO repeater PeriodicSystem: os75nb_lastensq interval is 310 seconds cd /home/adcp/uhdas_tmp; run_lastensq.py -d os75nb --update_pygbin --averages --plotens_mpl --kt_vecprof --pingwarnN 30 2018-03-07 19:50:23,916 INFO repeater PeriodicSystem: os75nb_quick interval is 310 seconds cd /home/adcp/uhdas_tmp; run_quick.py -d os75nb 2018-03-07 19:50:23,917 INFO repeater PeriodicSystem: os75nb_lastvec interval is 310 seconds cd /home/adcp/uhdas_tmp; run_lastfew_vec.py -d os75nb 2018-03-07 19:50:23,917 INFO repeater PeriodicSystem: os75nb_3dayplots interval is 300 seconds cd /home/adcp/uhdas_tmp; run_3dayplots_mpl.py -d os75nb --plot_amp 2018-03-07 19:50:23,917 INFO repeater PeriodicSystem: os75nb_tsstats interval is 900 seconds cd /home/adcp/uhdas_tmp; run_plot_tsstats.py os75nb 2018-03-07 19:50:23,917 INFO repeater PeriodicSystem: os75nb_10pings interval is 900 seconds cd /home/adcp/uhdas_tmp; run_grab_lastpings.py -d os75nb 2018-03-07 19:50:23,917 INFO repeater PeriodicSystem: os75nb_beamplots interval is 900 seconds cd /home/adcp/uhdas_tmp; plot_beamdiagnostics.py -m 20 -d os75nb --savefigs --webcopy -p scattering 2018-03-07 19:50:23,917 INFO repeater PeriodicSystem: os75nb_beamplots interval is 900 seconds cd /home/adcp/uhdas_tmp; plot_beamdiagnostics.py -m 20 -d os75nb --savefigs --webcopy -p velocity 2018-03-07 19:50:23,924 INFO procsetup Web_speedlog IP is 10.48.13.43 2018-03-07 19:50:23,925 INFO uhdas_webgen copying /home/adcp/config/proc_cfg.py to /home/adcp/www/configs/proc_cfg.py.txt 2018-03-07 19:50:23,925 INFO uhdas_webgen copying /home/adcp/config/sensor_cfg.py to /home/adcp/www/configs/sensor_cfg.py.txt 2018-03-07 19:50:23,925 INFO uhdas_webgen copying /home/adcp/config/cmdfiles/os75_default.cmd to /home/adcp/www/configs/os75_default.cmd.txt 2018-03-07 19:50:24,073 INFO repeater PeriodicSystem: posmv_hcorrstats interval is 900 seconds cd /home/adcp/uhdas_tmp; run_update_hbins.py; run_hbinhcorrstats.py --hcorr_inst posmv --plotdh --printstats 2018-03-07 19:50:24,074 INFO repeater PeriodicSystem: posmv_plotposmv interval is 900 seconds cd /home/adcp/uhdas_tmp; run_plotposmv.py -n25 -d posmv 2018-03-07 19:50:24,074 INFO root staging cruise report cd /home/adcp/uhdas_tmp; uhdas_report_generator.py --hacc_cutoff 0.020 -u /home/data/RB1802_CAL 2018-03-07 19:50:24,074 INFO repeater PeriodicSystem: report_generator interval is 900 seconds cd /home/adcp/uhdas_tmp; uhdas_report_generator.py --hacc_cutoff 0.020 -u /home/data/RB1802_CAL 2018-03-07 19:50:24,074 INFO root cleanup_figs no_figure 2018-03-07 19:50:24,079 INFO repeater writing repeaterlist to /home/adcp/uhdas_tmp/repeaters.txt 2018-03-07 19:55:24,780 INFO repeater task os75bb_3dayplots starting 0.9 seconds late 2018-03-07 19:55:25,365 ERROR repeater task os75bb_3dayplots returncode 1 2018-03-07 19:55:25,365 INFO repeater task os75bb_3dayplots output: cannot write codasdb data samples for daily_report Traceback (most recent call last): File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 453, in save_data_sample_db(cid, '_cont', cruiseinfo.daily_dir, -1.2) File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 143, in save_data_sample_db dinfo = get_dbinfo(cid, ndays) File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 221, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 455, in _codas.DB.__init__ (codas/src/_codas.c:6040) IOError: Can't open database /home/data/RB1802_CAL/proc/os75bb/adcpdb/a_rb CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 Traceback (most recent call last): File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 460, in dinfo = get_dbinfo(cid, ndays=-1.5) File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 221, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 455, in _codas.DB.__init__ (codas/src/_codas.c:6040) IOError: Can't open database /home/data/RB1802_CAL/proc/os75bb/adcpdb/a_rb 2018-03-07 19:55:25,365 INFO repeater task os75bb_3dayplots ended after 0.6 seconds 2018-03-07 19:55:25,366 INFO repeater task os75nb_3dayplots starting 1.4 seconds late 2018-03-07 19:55:25,782 ERROR repeater task os75nb_3dayplots returncode 1 2018-03-07 19:55:25,782 INFO repeater task os75nb_3dayplots output: cannot write codasdb data samples for daily_report Traceback (most recent call last): File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 453, in save_data_sample_db(cid, '_cont', cruiseinfo.daily_dir, -1.2) File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 143, in save_data_sample_db dinfo = get_dbinfo(cid, ndays) File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 221, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 455, in _codas.DB.__init__ (codas/src/_codas.c:6040) IOError: Can't open database /home/data/RB1802_CAL/proc/os75nb/adcpdb/a_rb CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 Traceback (most recent call last): File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 460, in dinfo = get_dbinfo(cid, ndays=-1.5) File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 221, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 455, in _codas.DB.__init__ (codas/src/_codas.c:6040) IOError: Can't open database /home/data/RB1802_CAL/proc/os75nb/adcpdb/a_rb 2018-03-07 19:55:25,782 INFO repeater task os75nb_3dayplots ended after 0.4 seconds 2018-03-07 19:55:35,804 INFO repeater task os75bb_lastensq starting 1.9 seconds late 2018-03-07 19:55:37,715 INFO repeater task os75bb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:82: RuntimeWarning: Degrees of freedom <= 0 for slice warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning) 2018-03-07 19:55:37,715 INFO repeater task os75bb_lastensq ended after 1.9 seconds 2018-03-07 19:55:37,717 INFO repeater task os75bb_lastensq: Time from /home/data/RB1802_CAL/proc/os75bb/load/wrote_ens_time: 2018/03/07 19:55:28 2018-03-07 19:55:37,717 INFO repeater task os75bb_quick starting 3.8 seconds late 2018-03-07 19:55:38,208 ERROR repeater task os75bb_quick returncode 2