2018-03-07 19:55:38,208 INFO     repeater     task os75bb_quick output:
Failure in plot: hcorr
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_mpl.py", line 1853, in run_plotter
    Plotter()
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_mpl.py", line 902, in __call__
    self.get_data()
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_mpl.py", line 946, in get_data
    nr, nc = _hcorr.shape
ValueError: need more than 1 value to unpack
Failure in: refsm
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_npy.py", line 1043, in run_calc
    Calc()
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_npy.py", line 144, in __call__
    uvsource=self.refuv_source)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/nav.py", line 97, in read_data
    data[:,1] = unwrap_lon(data[:,1])
  File "/usr/lib/python2.7/dist-packages/numpy/ma/core.py", line 3114, in __getitem__
    dout = self.data[indx]
IndexError: too many indices for array
cannot run numpy reflayer smoothing
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_run.py", line 525, in run_refsm
    self.run_refsm_npy()
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_npy.py", line 1055, in run_refsm_npy
    self.run_calc('refsm', **kw)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_npy.py", line 1046, in run_calc
    raise quickFatalError('Q_npy.runcalc: %s failure ', calcname)
quickFatalError: ('Q_npy.runcalc: %s failure ', 'refsm')
command put_tuv put_tuv.tmp returncode 255
 output:
 

 DATABASE:  ../adcpdb/a_rb SUCCESSFULLY OPENED
%% ERROR: File refsm_tuv.asc could not be opened.


running quick_adcp
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_quick.py", line 172, in <module>
    quick_adcp(['--cntfile', cntfile_proc])
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_adcp.py", line 1273, in quick_adcp
    run_navsteps(steps2run, opts, proc, stepN)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_adcp.py", line 838, in run_navsteps
    proc.run_put_tuv()
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_run.py", line 581, in run_put_tuv
    workdir=workdir)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_setup.py", line 118, in runcmd
    raise quickFatalError("\nFailure in command:\n%s" % syscmd)
quickFatalError: 
Failure in command:
put_tuv put_tuv.tmp

2018-03-07 19:55:38,208 INFO     repeater     task os75bb_quick ended after 0.5 seconds
2018-03-07 19:55:38,209 INFO     repeater     task os75bb_lastvec starting 4.3 seconds late
2018-03-07 19:55:38,418 INFO     repeater     task os75bb_lastvec output:
cannot make last_few_vec plot
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_lastfew_vec.py", line 107, in <module>
    LFV.stage_refls()
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/plot_lastfew_vec.py", line 154, in stage_refls
    urefsm = Runstats(uref, self.avgwin).mean
  File "runstats.pyx", line 126, in runstats.Runstats.__init__ (num/src/runstats.c:2441)
  File "/usr/lib/python2.7/dist-packages/numpy/ma/core.py", line 3103, in astype
    if self._fill_value is not None:
AttributeError: 'MaskedConstant' object has no attribute '_fill_value'

2018-03-07 19:55:38,418 INFO     repeater     task os75bb_lastvec ended after 0.2 seconds
2018-03-07 19:55:38,420 INFO     repeater     task os75nb_lastensq starting 4.5 seconds late
2018-03-07 19:55:39,862 INFO     repeater     task os75nb_lastensq output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:82: RuntimeWarning: Degrees of freedom <= 0 for slice
  warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning)

2018-03-07 19:55:39,862 INFO     repeater     task os75nb_lastensq ended after 1.4 seconds
2018-03-07 19:55:39,862 INFO     repeater     task os75nb_lastensq: Time from /home/data/RB1802_CAL/proc/os75nb/load/wrote_ens_time: 2018/03/07 19:55:28
2018-03-07 19:55:39,862 INFO     repeater     task os75nb_quick starting 5.9 seconds late
2018-03-07 19:55:40,386 ERROR    repeater     task os75nb_quick returncode 2
2018-03-07 19:55:40,386 INFO     repeater     task os75nb_quick output:
Failure in plot: hcorr
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_mpl.py", line 1853, in run_plotter
    Plotter()
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_mpl.py", line 902, in __call__
    self.get_data()
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_mpl.py", line 946, in get_data
    nr, nc = _hcorr.shape
ValueError: need more than 1 value to unpack
Failure in: refsm
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_npy.py", line 1043, in run_calc
    Calc()
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_npy.py", line 144, in __call__
    uvsource=self.refuv_source)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/nav.py", line 97, in read_data
    data[:,1] = unwrap_lon(data[:,1])
  File "/usr/lib/python2.7/dist-packages/numpy/ma/core.py", line 3114, in __getitem__
    dout = self.data[indx]
IndexError: too many indices for array
cannot run numpy reflayer smoothing
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_run.py", line 525, in run_refsm
    self.run_refsm_npy()
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_npy.py", line 1055, in run_refsm_npy
    self.run_calc('refsm', **kw)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_npy.py", line 1046, in run_calc
    raise quickFatalError('Q_npy.runcalc: %s failure ', calcname)
quickFatalError: ('Q_npy.runcalc: %s failure ', 'refsm')
command put_tuv put_tuv.tmp returncode 255
 output:
 

 DATABASE:  ../adcpdb/a_rb SUCCESSFULLY OPENED
%% ERROR: File refsm_tuv.asc could not be opened.


running quick_adcp
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_quick.py", line 172, in <module>
    quick_adcp(['--cntfile', cntfile_proc])
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_adcp.py", line 1273, in quick_adcp
    run_navsteps(steps2run, opts, proc, stepN)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_adcp.py", line 838, in run_navsteps
    proc.run_put_tuv()
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_run.py", line 581, in run_put_tuv
    workdir=workdir)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_setup.py", line 118, in runcmd
    raise quickFatalError("\nFailure in command:\n%s" % syscmd)
quickFatalError: 
Failure in command:
put_tuv put_tuv.tmp

2018-03-07 19:55:40,386 INFO     repeater     task os75nb_quick ended after 0.5 seconds
2018-03-07 19:55:40,386 INFO     repeater     task os75nb_lastvec starting 6.5 seconds late
2018-03-07 19:55:40,603 INFO     repeater     task os75nb_lastvec output:
cannot make last_few_vec plot
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_lastfew_vec.py", line 107, in <module>
    LFV.stage_refls()
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/plot_lastfew_vec.py", line 154, in stage_refls
    urefsm = Runstats(uref, self.avgwin).mean
  File "runstats.pyx", line 126, in runstats.Runstats.__init__ (num/src/runstats.c:2441)
  File "/usr/lib/python2.7/dist-packages/numpy/ma/core.py", line 3103, in astype
    if self._fill_value is not None:
AttributeError: 'MaskedConstant' object has no attribute '_fill_value'

2018-03-07 19:55:40,603 INFO     repeater     task os75nb_lastvec ended after 0.2 seconds
2018-03-07 20:00:26,239 INFO     repeater     task os75bb_3dayplots starting 2.3 seconds late
2018-03-07 20:00:26,712 INFO     repeater     task os75bb_3dayplots output:
cannot write codasdb data samples for daily_report
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 453, in <module>
    save_data_sample_db(cid, '_cont', cruiseinfo.daily_dir, -1.2)
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 180, in save_data_sample_db
    u = (data['u']*100).astype(np.int16).filled(32767)
AttributeError: 'numpy.ndarray' object has no attribute 'filled'
cannot make panel plot
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 465, in <module>
    cruiseinfo.cruiseid, ddrange=-0.5)
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 391, in make_panelplot
    pplotter.fill_masked_inplace(shortdataT)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/panelplotter.py", line 160, in fill_masked_inplace
    newz = depthgrid.T*dz[:,np.newaxis] +  newdata.depth[:,0][:,np.newaxis]
IndexError: invalid index to scalar variable.
cannot make 3-day shallow plot
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 474, in <module>
    '_shallow', cruiseinfo.cruiseid, deltat=0.5/24)
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 294, in vecplot
    ax=ax)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/dataplotter.py", line 330, in vecplot
    raise ValueError('no good positions')
ValueError: no good positions
cannot make 3-day contour plots
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 489, in <module>
    cruiseinfo.cruiseid, add_amp = options.plot_amp)
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 332, in conplots
    xgrids['lat'] = np.linspace(lat.min(), lat.max(), ng)
  File "/usr/lib/python2.7/dist-packages/numpy/ma/core.py", line 5464, in min
    axis=axis, out=out).view(type(self))
  File "/usr/lib/python2.7/dist-packages/numpy/core/_methods.py", line 29, in _amin
    return umr_minimum(a, axis, None, out, keepdims)
ValueError: zero-size array to reduction operation minimum which has no identity
cannot make index.html
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 513, in <module>
    verbose = False)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/plot/html_table.py", line 261, in __init__
    raise RuntimeError("No files found matching %s" % globstr)
RuntimeError: No files found matching *_shallow.png
cannot make index.html
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 513, in <module>
    verbose = False)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/plot/html_table.py", line 261, in __init__
    raise RuntimeError("No files found matching %s" % globstr)
RuntimeError: No files found matching *_shallow.png

2018-03-07 20:00:26,713 INFO     repeater     task os75bb_3dayplots ended after 0.5 seconds
2018-03-07 20:00:26,714 INFO     repeater     task os75nb_3dayplots starting 2.8 seconds late
2018-03-07 20:00:27,185 INFO     repeater     task os75nb_3dayplots output:
cannot write codasdb data samples for daily_report
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 453, in <module>
    save_data_sample_db(cid, '_cont', cruiseinfo.daily_dir, -1.2)
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 180, in save_data_sample_db
    u = (data['u']*100).astype(np.int16).filled(32767)
AttributeError: 'numpy.ndarray' object has no attribute 'filled'
cannot make panel plot
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 465, in <module>
    cruiseinfo.cruiseid, ddrange=-0.5)
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 391, in make_panelplot
    pplotter.fill_masked_inplace(shortdataT)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/panelplotter.py", line 160, in fill_masked_inplace
    newz = depthgrid.T*dz[:,np.newaxis] +  newdata.depth[:,0][:,np.newaxis]
IndexError: invalid index to scalar variable.
cannot make 3-day shallow plot
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 474, in <module>
    '_shallow', cruiseinfo.cruiseid, deltat=0.5/24)
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 294, in vecplot
    ax=ax)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/dataplotter.py", line 330, in vecplot
    raise ValueError('no good positions')
ValueError: no good positions
cannot make 3-day contour plots
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 489, in <module>
    cruiseinfo.cruiseid, add_amp = options.plot_amp)
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 332, in conplots
    xgrids['lat'] = np.linspace(lat.min(), lat.max(), ng)
  File "/usr/lib/python2.7/dist-packages/numpy/ma/core.py", line 5464, in min
    axis=axis, out=out).view(type(self))
  File "/usr/lib/python2.7/dist-packages/numpy/core/_methods.py", line 29, in _amin
    return umr_minimum(a, axis, None, out, keepdims)
ValueError: zero-size array to reduction operation minimum which has no identity
cannot make index.html
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 513, in <module>
    verbose = False)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/plot/html_table.py", line 261, in __init__
    raise RuntimeError("No files found matching %s" % globstr)
RuntimeError: No files found matching *_shallow.png
cannot make index.html
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 513, in <module>
    verbose = False)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/plot/html_table.py", line 261, in __init__
    raise RuntimeError("No files found matching %s" % globstr)
RuntimeError: No files found matching *_shallow.png

2018-03-07 20:00:27,185 INFO     repeater     task os75nb_3dayplots ended after 0.5 seconds
2018-03-07 20:00:42,220 INFO     repeater     task os75bb_lastensq starting 4.2 seconds late
2018-03-07 20:00:44,233 INFO     repeater     task os75bb_lastensq output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:82: RuntimeWarning: Degrees of freedom <= 0 for slice
  warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning)

2018-03-07 20:00:44,233 INFO     repeater     task os75bb_lastensq ended after 2.0 seconds
2018-03-07 20:00:44,234 INFO     repeater     task os75bb_lastensq: Time from /home/data/RB1802_CAL/proc/os75bb/load/wrote_ens_time: 2018/03/07 20:00:28
2018-03-07 20:00:44,234 INFO     repeater     task os75bb_quick starting 0.3 seconds late
2018-03-07 20:00:45,688 INFO     repeater     task os75bb_quick output:
/usr/lib/python2.7/dist-packages/matplotlib/axes/_base.py:3045: UserWarning: Attempting to set identical bottom==top results
in singular transformations; automatically expanding.
bottom=0.0, top=0.0
  'bottom=%s, top=%s') % (bottom, top))
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)

2018-03-07 20:00:45,688 INFO     repeater     task os75bb_quick ended after 1.5 seconds
2018-03-07 20:00:45,688 INFO     repeater     task os75bb_lastvec starting 1.8 seconds late
2018-03-07 20:00:46,032 INFO     repeater     task os75bb_lastvec ended after 0.3 seconds
2018-03-07 20:00:46,033 INFO     repeater     task os75nb_lastensq starting 8.0 seconds late
2018-03-07 20:00:47,548 INFO     repeater     task os75nb_lastensq output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:82: RuntimeWarning: Degrees of freedom <= 0 for slice
  warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning)

2018-03-07 20:00:47,548 INFO     repeater     task os75nb_lastensq ended after 1.5 seconds
2018-03-07 20:00:47,548 INFO     repeater     task os75nb_lastensq: Time from /home/data/RB1802_CAL/proc/os75nb/load/wrote_ens_time: 2018/03/07 20:00:28
2018-03-07 20:00:47,548 INFO     repeater     task os75nb_quick starting 3.6 seconds late
2018-03-07 20:00:48,999 INFO     repeater     task os75nb_quick output:
/usr/lib/python2.7/dist-packages/matplotlib/axes/_base.py:3045: UserWarning: Attempting to set identical bottom==top results
in singular transformations; automatically expanding.
bottom=0.0, top=0.0
  'bottom=%s, top=%s') % (bottom, top))
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)

2018-03-07 20:00:48,999 INFO     repeater     task os75nb_quick ended after 1.5 seconds
2018-03-07 20:00:48,999 INFO     repeater     task os75nb_lastvec starting 5.1 seconds late
2018-03-07 20:00:49,328 INFO     repeater     task os75nb_lastvec ended after 0.3 seconds
2018-03-07 20:05:24,990 INFO     repeater     task os75bb_3dayplots starting 1.1 seconds late
2018-03-07 20:05:26,129 INFO     repeater     task os75bb_3dayplots output:
cannot make 3-day contour plots
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 489, in <module>
    cruiseinfo.cruiseid, add_amp = options.plot_amp)
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 360, in conplots
    aclim = amp_clim[procdirname[:2]])
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/dataplotter.py", line 771, in cuvplot
    nxticks=nxticks, aclim=aclim)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/dataplotter.py", line 844, in add_cuvamp
    vmin=aclim[0], vmax=aclim[1])
  File "/usr/lib/python2.7/dist-packages/matplotlib/__init__.py", line 1814, in inner
    return func(ax, *args, **kwargs)
  File "/usr/lib/python2.7/dist-packages/matplotlib/axes/_axes.py", line 5564, in pcolorfast
    if (np.ptp(dx) < 0.01 * np.abs(dx.mean()) and
  File "/usr/lib/python2.7/dist-packages/numpy/core/fromnumeric.py", line 2177, in ptp
    return ptp(axis, out)
ValueError: zero-size array to reduction operation maximum which has no identity
could not parse  065_os75bb_ddaycont.png
could not parse  065_os75bb_latcont.png
could not parse  065_os75bb_loncont.png
could not parse  065_os75bb_ddaycont.png
could not parse  065_os75bb_latcont.png
could not parse  065_os75bb_loncont.png

2018-03-07 20:05:26,129 INFO     repeater     task os75bb_3dayplots ended after 1.1 seconds
2018-03-07 20:05:26,129 INFO     repeater     task os75bb_tsstats starting 2.2 seconds late
2018-03-07 20:05:26,670 INFO     repeater     task os75bb_tsstats ended after 0.5 seconds
2018-03-07 20:05:26,671 INFO     repeater     task os75bb_10pings starting 2.8 seconds late
2018-03-07 20:05:26,772 INFO     repeater     task os75bb_10pings ended after 0.1 seconds
2018-03-07 20:05:26,772 INFO     repeater     task os75bb_beamplots starting 2.9 seconds late
2018-03-07 20:05:27,776 INFO     repeater     task os75bb_beamplots output:
Starting procsetup
scriptpath is /usr/local/currents/bin

2018-03-07 20:05:27,776 INFO     repeater     task os75bb_beamplots ended after 1.0 seconds
2018-03-07 20:05:27,776 INFO     repeater     task os75bb_beamplots starting 3.9 seconds late
2018-03-07 20:05:28,767 INFO     repeater     task os75bb_beamplots output:
Starting procsetup
scriptpath is /usr/local/currents/bin

2018-03-07 20:05:28,768 INFO     repeater     task os75bb_beamplots ended after 1.0 seconds
2018-03-07 20:05:28,768 INFO     repeater     task os75nb_3dayplots starting 4.9 seconds late
2018-03-07 20:05:29,927 INFO     repeater     task os75nb_3dayplots output:
cannot make 3-day contour plots
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 489, in <module>
    cruiseinfo.cruiseid, add_amp = options.plot_amp)
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 360, in conplots
    aclim = amp_clim[procdirname[:2]])
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/dataplotter.py", line 771, in cuvplot
    nxticks=nxticks, aclim=aclim)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/dataplotter.py", line 844, in add_cuvamp
    vmin=aclim[0], vmax=aclim[1])
  File "/usr/lib/python2.7/dist-packages/matplotlib/__init__.py", line 1814, in inner
    return func(ax, *args, **kwargs)
  File "/usr/lib/python2.7/dist-packages/matplotlib/axes/_axes.py", line 5564, in pcolorfast
    if (np.ptp(dx) < 0.01 * np.abs(dx.mean()) and
  File "/usr/lib/python2.7/dist-packages/numpy/core/fromnumeric.py", line 2177, in ptp
    return ptp(axis, out)
ValueError: zero-size array to reduction operation maximum which has no identity
could not parse  065_os75nb_ddaycont.png
could not parse  065_os75nb_latcont.png
could not parse  065_os75nb_loncont.png
could not parse  065_os75nb_ddaycont.png
could not parse  065_os75nb_latcont.png
could not parse  065_os75nb_loncont.png

2018-03-07 20:05:29,927 INFO     repeater     task os75nb_3dayplots ended after 1.2 seconds
2018-03-07 20:05:29,927 INFO     repeater     task os75nb_tsstats starting 6.0 seconds late
2018-03-07 20:05:30,464 INFO     repeater     task os75nb_tsstats ended after 0.5 seconds
2018-03-07 20:05:30,464 INFO     repeater     task os75nb_10pings starting 6.5 seconds late
2018-03-07 20:05:30,560 INFO     repeater     task os75nb_10pings ended after 0.1 seconds
2018-03-07 20:05:30,560 INFO     repeater     task os75nb_beamplots starting 6.6 seconds late
2018-03-07 20:05:31,533 INFO     repeater     task os75nb_beamplots output:
Starting procsetup
scriptpath is /usr/local/currents/bin

2018-03-07 20:05:31,533 INFO     repeater     task os75nb_beamplots ended after 1.0 seconds
2018-03-07 20:05:31,533 INFO     repeater     task os75nb_beamplots starting 7.6 seconds late
2018-03-07 20:05:32,516 INFO     repeater     task os75nb_beamplots output:
Starting procsetup
scriptpath is /usr/local/currents/bin

2018-03-07 20:05:32,516 INFO     repeater     task os75nb_beamplots ended after 1.0 seconds
2018-03-07 20:05:32,517 INFO     repeater     task posmv_hcorrstats starting 8.4 seconds late
2018-03-07 20:05:33,257 INFO     repeater     task posmv_hcorrstats ended after 0.7 seconds
2018-03-07 20:05:33,258 INFO     repeater     task posmv_plotposmv starting 9.2 seconds late
2018-03-07 20:05:33,950 INFO     repeater     task posmv_plotposmv ended after 0.7 seconds
2018-03-07 20:05:33,950 INFO     repeater     task report_generator starting 9.9 seconds late
2018-03-07 20:05:37,637 INFO     repeater     task report_generator output:
cruisename is <RB1802_CAL>
cruisename is <RB1802_CAL>
report_dir is </home/data/RB1802_CAL/reports>
report_dir is </home/data/RB1802_CAL/reports>
uhdas_dir is </home/data/RB1802_CAL>
uhdas_dir is </home/data/RB1802_CAL>
0.0 sec : initial png rsync
0.0 sec : initial png rsync
0.0 sec : initial png rsync
0.0 sec : initial png rsync
1.0 sec :              navplot: plot_rnav.py -s300 --noshow  --title RB1802_CAL --outfile /home/data/RB1802_CAL/reports/nav_plot_all  /home/data/RB1802_CAL/rbin/gpsnav/*.gps.rbin
1.0 sec :              navplot: plot_rnav.py -s300 --noshow  --title RB1802_CAL --outfile /home/data/RB1802_CAL/reports/nav_plot_all  /home/data/RB1802_CAL/rbin/gpsnav/*.gps.rbin
0.0 sec :              navplot: convert  -resize 200  /home/data/RB1802_CAL/reports/nav_plot_all_topo.png /home/data/RB1802_CAL/reports/nav_plot_all_topoT.png 
0.0 sec :              navplot: convert  -resize 200  /home/data/RB1802_CAL/reports/nav_plot_all_topo.png /home/data/RB1802_CAL/reports/nav_plot_all_topoT.png 
0.0 sec :              navplot: convert  -resize 200  /home/data/RB1802_CAL/reports/nav_plot_all_txy.png /home/data/RB1802_CAL/reports/nav_plot_all_txyT.png 
0.0 sec :              navplot: convert  -resize 200  /home/data/RB1802_CAL/reports/nav_plot_all_txy.png /home/data/RB1802_CAL/reports/nav_plot_all_txyT.png 
0.0 sec :          png_archive: rsync -a /home/data/RB1802_CAL/proc/os75nb/png_archive/ /home/data/RB1802_CAL/reports/os75nb_pngarchive
0.0 sec :          png_archive: rsync -a /home/data/RB1802_CAL/proc/os75nb/png_archive/ /home/data/RB1802_CAL/reports/os75nb_pngarchive
0.0 sec :          png_archive: rsync -a /home/data/RB1802_CAL/proc/os75bb/png_archive/ /home/data/RB1802_CAL/reports/os75bb_pngarchive
0.0 sec :          png_archive: rsync -a /home/data/RB1802_CAL/proc/os75bb/png_archive/ /home/data/RB1802_CAL/reports/os75bb_pngarchive
0.0 sec :       uhdas_overview: uhdas_info.py --overview --logfile  /home/data/RB1802_CAL/reports/uhdas_overview.txt /home/data/RB1802_CAL
0.0 sec :       uhdas_overview: uhdas_info.py --overview --logfile  /home/data/RB1802_CAL/reports/uhdas_overview.txt /home/data/RB1802_CAL
0.0 sec :        sonar_summary: sonar_summary.py --outfile /home/data/RB1802_CAL/reports/sonar_summary.txt --uhdas_dir /home/data/RB1802_CAL 
0.0 sec :        sonar_summary: sonar_summary.py --outfile /home/data/RB1802_CAL/reports/sonar_summary.txt --uhdas_dir /home/data/RB1802_CAL 
0.0 sec :        adcp_settings: uhdas_info.py --settings --logfile  /home/data/RB1802_CAL/reports/ADCP_settings.txt /home/data/RB1802_CAL
0.0 sec :        adcp_settings: uhdas_info.py --settings --logfile  /home/data/RB1802_CAL/reports/ADCP_settings.txt /home/data/RB1802_CAL
0.0 sec :            adcp_cals: uhdas_info.py --cals    --logfile  /home/data/RB1802_CAL/reports/ADCP_cals.txt /home/data/RB1802_CAL
0.0 sec :            adcp_cals: uhdas_info.py --cals    --logfile  /home/data/RB1802_CAL/reports/ADCP_cals.txt /home/data/RB1802_CAL
1.0 sec :            ens_hcorr: plot_enshcorr.py --infile /home/data/RB1802_CAL/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1802_CAL/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv
1.0 sec :            ens_hcorr: plot_enshcorr.py --infile /home/data/RB1802_CAL/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1802_CAL/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv
1.0 sec :            ens_hcorr: plot_enshcorr.py --infile /home/data/RB1802_CAL/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1802_CAL/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv
1.0 sec :            ens_hcorr: plot_enshcorr.py --infile /home/data/RB1802_CAL/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1802_CAL/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv
1.0 sec :    hcorr_serial_plot: plot_posmv.py --cutoff  0.020 -s 60 -o /home/data/RB1802_CAL/reports/posmv_quality --noshow /home/data/RB1802_CAL
1.0 sec :    hcorr_serial_plot: plot_posmv.py --cutoff  0.020 -s 60 -o /home/data/RB1802_CAL/reports/posmv_quality --noshow /home/data/RB1802_CAL
0.0 sec :                pycfg: cp -p /home/data/RB1802_CAL/raw/config/RB1802_CAL_proc.py /home/data/RB1802_CAL/reports/RB1802_CAL_proc.py.txt
0.0 sec :                pycfg: cp -p /home/data/RB1802_CAL/raw/config/RB1802_CAL_proc.py /home/data/RB1802_CAL/reports/RB1802_CAL_proc.py.txt
0.0 sec :                pycfg: cp -p /home/data/RB1802_CAL/raw/config/RB1802_CAL_sensor.py /home/data/RB1802_CAL/reports/RB1802_CAL_sensor.py.txt
0.0 sec :                pycfg: cp -p /home/data/RB1802_CAL/raw/config/RB1802_CAL_sensor.py /home/data/RB1802_CAL/reports/RB1802_CAL_sensor.py.txt


3.0  seconds elapsed



3.0  seconds elapsed

html page starts here: /home/data/RB1802_CAL/reports/index.html
html page starts here: /home/data/RB1802_CAL/reports/index.html

2018-03-07 20:05:37,637 INFO     repeater     task report_generator ended after 3.7 seconds
2018-03-07 20:05:42,640 INFO     repeater     task os75bb_lastensq starting 4.6 seconds late
2018-03-07 20:05:44,551 INFO     repeater     task os75bb_lastensq output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:82: RuntimeWarning: Degrees of freedom <= 0 for slice
  warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning)

2018-03-07 20:05:44,551 INFO     repeater     task os75bb_lastensq ended after 1.9 seconds
2018-03-07 20:05:44,551 INFO     repeater     task os75bb_lastensq: Time from /home/data/RB1802_CAL/proc/os75bb/load/wrote_ens_time: 2018/03/07 20:05:28
2018-03-07 20:05:44,552 INFO     repeater     task os75nb_lastensq starting 6.6 seconds late
2018-03-07 20:05:45,950 INFO     repeater     task os75nb_lastensq output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:82: RuntimeWarning: Degrees of freedom <= 0 for slice
  warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning)

2018-03-07 20:05:45,950 INFO     repeater     task os75nb_lastensq ended after 1.4 seconds
2018-03-07 20:05:45,950 INFO     repeater     task os75nb_lastensq: Time from /home/data/RB1802_CAL/proc/os75nb/load/wrote_ens_time: 2018/03/07 20:05:28
2018-03-07 20:05:55,973 INFO     repeater     task os75bb_quick starting 2.1 seconds late
2018-03-07 20:05:57,877 INFO     repeater     task os75bb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)
/usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan.
  warnings.warn("Warning: converting a masked element to nan.")

2018-03-07 20:05:57,877 INFO     repeater     task os75bb_quick ended after 1.9 seconds
2018-03-07 20:05:57,877 INFO     repeater     task os75bb_lastvec starting 4.0 seconds late
2018-03-07 20:05:58,235 INFO     repeater     task os75bb_lastvec ended after 0.4 seconds
2018-03-07 20:05:58,236 INFO     repeater     task os75nb_quick starting 4.3 seconds late
2018-03-07 20:06:00,236 INFO     repeater     task os75nb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)
/usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan.
  warnings.warn("Warning: converting a masked element to nan.")

2018-03-07 20:06:00,236 INFO     repeater     task os75nb_quick ended after 2.0 seconds
2018-03-07 20:06:00,237 INFO     repeater     task os75nb_lastvec starting 6.3 seconds late
2018-03-07 20:06:00,601 INFO     repeater     task os75nb_lastvec ended after 0.4 seconds
2018-03-07 20:10:26,183 INFO     repeater     task os75bb_3dayplots starting 2.3 seconds late
2018-03-07 20:10:28,335 INFO     repeater     task os75bb_3dayplots output:
cannot make 3-day contour plots
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 489, in <module>
    cruiseinfo.cruiseid, add_amp = options.plot_amp)
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 360, in conplots
    aclim = amp_clim[procdirname[:2]])
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/dataplotter.py", line 771, in cuvplot
    nxticks=nxticks, aclim=aclim)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/dataplotter.py", line 844, in add_cuvamp
    vmin=aclim[0], vmax=aclim[1])
  File "/usr/lib/python2.7/dist-packages/matplotlib/__init__.py", line 1814, in inner
    return func(ax, *args, **kwargs)
  File "/usr/lib/python2.7/dist-packages/matplotlib/axes/_axes.py", line 5564, in pcolorfast
    if (np.ptp(dx) < 0.01 * np.abs(dx.mean()) and
  File "/usr/lib/python2.7/dist-packages/numpy/core/fromnumeric.py", line 2177, in ptp
    return ptp(axis, out)
ValueError: zero-size array to reduction operation maximum which has no identity
could not parse  065_os75bb_ddaycont.png
could not parse  065_os75bb_latcont.png
could not parse  065_os75bb_loncont.png
could not parse  065_os75bb_ddaycont.png
could not parse  065_os75bb_latcont.png
could not parse  065_os75bb_loncont.png

2018-03-07 20:10:28,335 INFO     repeater     task os75bb_3dayplots ended after 2.2 seconds
2018-03-07 20:10:28,336 INFO     repeater     task os75nb_3dayplots starting 4.4 seconds late
2018-03-07 20:10:30,520 INFO     repeater     task os75nb_3dayplots output:
cannot make 3-day contour plots
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 489, in <module>
    cruiseinfo.cruiseid, add_amp = options.plot_amp)
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 360, in conplots
    aclim = amp_clim[procdirname[:2]])
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/dataplotter.py", line 771, in cuvplot
    nxticks=nxticks, aclim=aclim)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/dataplotter.py", line 844, in add_cuvamp
    vmin=aclim[0], vmax=aclim[1])
  File "/usr/lib/python2.7/dist-packages/matplotlib/__init__.py", line 1814, in inner
    return func(ax, *args, **kwargs)
  File "/usr/lib/python2.7/dist-packages/matplotlib/axes/_axes.py", line 5564, in pcolorfast
    if (np.ptp(dx) < 0.01 * np.abs(dx.mean()) and
  File "/usr/lib/python2.7/dist-packages/numpy/core/fromnumeric.py", line 2177, in ptp
    return ptp(axis, out)
ValueError: zero-size array to reduction operation maximum which has no identity
could not parse  065_os75nb_ddaycont.png
could not parse  065_os75nb_latcont.png
could not parse  065_os75nb_loncont.png
could not parse  065_os75nb_ddaycont.png
could not parse  065_os75nb_latcont.png
could not parse  065_os75nb_loncont.png

2018-03-07 20:10:30,521 INFO     repeater     task os75nb_3dayplots ended after 2.2 seconds
2018-03-07 20:10:40,543 INFO     repeater     task os75bb_lastensq starting 2.5 seconds late
2018-03-07 20:10:42,507 INFO     repeater     task os75bb_lastensq output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:82: RuntimeWarning: Degrees of freedom <= 0 for slice
  warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning)

2018-03-07 20:10:42,507 INFO     repeater     task os75bb_lastensq ended after 2.0 seconds
2018-03-07 20:10:42,507 INFO     repeater     task os75bb_lastensq: Time from /home/data/RB1802_CAL/proc/os75bb/load/wrote_ens_time: 2018/03/07 20:10:28
2018-03-07 20:10:42,509 INFO     repeater     task os75nb_lastensq starting 4.5 seconds late
2018-03-07 20:10:43,947 INFO     repeater     task os75nb_lastensq output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:82: RuntimeWarning: Degrees of freedom <= 0 for slice
  warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning)

2018-03-07 20:10:43,947 INFO     repeater     task os75nb_lastensq ended after 1.4 seconds
2018-03-07 20:10:43,947 INFO     repeater     task os75nb_lastensq: Time from /home/data/RB1802_CAL/proc/os75nb/load/wrote_ens_time: 2018/03/07 20:10:28
2018-03-07 20:11:03,998 INFO     repeater     task os75bb_quick starting 0.1 seconds late
2018-03-07 20:11:05,766 INFO     repeater     task os75bb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)
/usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan.
  warnings.warn("Warning: converting a masked element to nan.")

2018-03-07 20:11:05,767 INFO     repeater     task os75bb_quick ended after 1.8 seconds
2018-03-07 20:11:05,767 INFO     repeater     task os75bb_lastvec starting 1.9 seconds late
2018-03-07 20:11:06,138 INFO     repeater     task os75bb_lastvec ended after 0.4 seconds
2018-03-07 20:11:06,139 INFO     repeater     task os75nb_quick starting 2.2 seconds late
2018-03-07 20:11:08,173 INFO     repeater     task os75nb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)
/usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan.
  warnings.warn("Warning: converting a masked element to nan.")

2018-03-07 20:11:08,173 INFO     repeater     task os75nb_quick ended after 2.0 seconds
2018-03-07 20:11:08,173 INFO     repeater     task os75nb_lastvec starting 4.3 seconds late
2018-03-07 20:11:08,522 INFO     repeater     task os75nb_lastvec ended after 0.3 seconds
2018-03-07 20:15:24,142 INFO     repeater     task os75bb_3dayplots starting 0.2 seconds late
2018-03-07 20:15:26,285 INFO     repeater     task os75bb_3dayplots output:
cannot make 3-day contour plots
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 489, in <module>
    cruiseinfo.cruiseid, add_amp = options.plot_amp)
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 360, in conplots
    aclim = amp_clim[procdirname[:2]])
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/dataplotter.py", line 771, in cuvplot
    nxticks=nxticks, aclim=aclim)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/dataplotter.py", line 844, in add_cuvamp
    vmin=aclim[0], vmax=aclim[1])
  File "/usr/lib/python2.7/dist-packages/matplotlib/__init__.py", line 1814, in inner
    return func(ax, *args, **kwargs)
  File "/usr/lib/python2.7/dist-packages/matplotlib/axes/_axes.py", line 5564, in pcolorfast
    if (np.ptp(dx) < 0.01 * np.abs(dx.mean()) and
  File "/usr/lib/python2.7/dist-packages/numpy/core/fromnumeric.py", line 2177, in ptp
    return ptp(axis, out)
ValueError: zero-size array to reduction operation maximum which has no identity
could not parse  065_os75bb_ddaycont.png
could not parse  065_os75bb_latcont.png
could not parse  065_os75bb_loncont.png
could not parse  065_os75bb_ddaycont.png
could not parse  065_os75bb_latcont.png
could not parse  065_os75bb_loncont.png

2018-03-07 20:15:26,285 INFO     repeater     task os75bb_3dayplots ended after 2.1 seconds
2018-03-07 20:15:26,286 INFO     repeater     task os75nb_3dayplots starting 2.4 seconds late
2018-03-07 20:15:28,474 INFO     repeater     task os75nb_3dayplots output:
cannot make 3-day contour plots
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 489, in <module>
    cruiseinfo.cruiseid, add_amp = options.plot_amp)
  File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 360, in conplots
    aclim = amp_clim[procdirname[:2]])
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/dataplotter.py", line 771, in cuvplot
    nxticks=nxticks, aclim=aclim)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/dataplotter.py", line 844, in add_cuvamp
    vmin=aclim[0], vmax=aclim[1])
  File "/usr/lib/python2.7/dist-packages/matplotlib/__init__.py", line 1814, in inner
    return func(ax, *args, **kwargs)
  File "/usr/lib/python2.7/dist-packages/matplotlib/axes/_axes.py", line 5564, in pcolorfast
    if (np.ptp(dx) < 0.01 * np.abs(dx.mean()) and
  File "/usr/lib/python2.7/dist-packages/numpy/core/fromnumeric.py", line 2177, in ptp
    return ptp(axis, out)
ValueError: zero-size array to reduction operation maximum which has no identity
could not parse  065_os75nb_ddaycont.png
could not parse  065_os75nb_latcont.png
could not parse  065_os75nb_loncont.png
could not parse  065_os75nb_ddaycont.png
could not parse  065_os75nb_latcont.png
could not parse  065_os75nb_loncont.png

2018-03-07 20:15:28,475 INFO     repeater     task os75nb_3dayplots ended after 2.2 seconds
2018-03-07 20:15:38,497 INFO     repeater     task os75bb_lastensq starting 0.5 seconds late
2018-03-07 20:15:39,799 ERROR    repeater     task os75bb_lastensq returncode 24
2018-03-07 20:15:39,799 INFO     repeater     task os75bb_lastensq output:
In body of run_lastensq.py
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_lastensq.py", line 414, in <module>
    E(plotname = 'kt_vecprof', zbin=4) #colorscheme='day'
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 227, in __call__
    self.fig5 = self.plot_vecprof_ktvec(zbin=zbin, vcolor=vcolor)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 545, in plot_vecprof_ktvec
    self.plot_vecprof(fig=fig, ax=ax[0], zbin=zbin, vecscale=vecscale)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 624, in plot_vecprof
    ax.quiver(0*zgood, zgood,
UnboundLocalError: local variable 'zgood' referenced before assignment

2018-03-07 20:15:39,799 INFO     repeater     task os75bb_lastensq ended after 1.3 seconds
2018-03-07 20:15:39,800 INFO     repeater     task os75bb_lastensq: Time from /home/data/RB1802_CAL/proc/os75bb/load/wrote_ens_time: 2018/03/07 20:15:28
2018-03-07 20:15:39,801 INFO     repeater     task os75nb_lastensq starting 1.8 seconds late
2018-03-07 20:15:41,292 INFO     repeater     task os75nb_lastensq ended after 1.5 seconds
2018-03-07 20:15:41,292 INFO     repeater     task os75nb_lastensq: Time from /home/data/RB1802_CAL/proc/os75nb/load/wrote_ens_time: 2018/03/07 20:15:28
2018-03-07 20:16:16,384 INFO     repeater     task os75bb_quick starting 2.5 seconds late
2018-03-07 20:16:18,217 INFO     repeater     task os75bb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)
/usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan.
  warnings.warn("Warning: converting a masked element to nan.")

2018-03-07 20:16:18,217 INFO     repeater     task os75bb_quick ended after 1.8 seconds
2018-03-07 20:16:18,217 INFO     repeater     task os75bb_lastvec starting 4.3 seconds late
2018-03-07 20:16:18,573 INFO     repeater     task os75bb_lastvec ended after 0.4 seconds
2018-03-07 20:16:18,574 INFO     repeater     task os75nb_quick starting 4.7 seconds late
2018-03-07 20:16:20,539 INFO     repeater     task os75nb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)
/usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan.
  warnings.warn("Warning: converting a masked element to nan.")

2018-03-07 20:16:20,539 INFO     repeater     task os75nb_quick ended after 2.0 seconds
2018-03-07 20:16:20,540 INFO     repeater     task os75nb_lastvec starting 6.6 seconds late
2018-03-07 20:16:20,901 INFO     repeater     task os75nb_lastvec ended after 0.4 seconds
2018-03-07 20:20:26,479 INFO     repeater     task os75bb_3dayplots starting 2.6 seconds late
2018-03-07 20:20:29,974 INFO     repeater     task os75bb_3dayplots ended after 3.5 seconds
2018-03-07 20:20:29,974 INFO     repeater     task os75bb_tsstats starting 6.1 seconds late
2018-03-07 20:20:30,542 INFO     repeater     task os75bb_tsstats ended after 0.6 seconds
2018-03-07 20:20:30,543 INFO     repeater     task os75bb_10pings starting 6.6 seconds late
2018-03-07 20:20:30,645 INFO     repeater     task os75bb_10pings ended after 0.1 seconds
2018-03-07 20:20:30,645 INFO     repeater     task os75bb_beamplots starting 6.7 seconds late
2018-03-07 20:20:31,634 INFO     repeater     task os75bb_beamplots output:
Starting procsetup
scriptpath is /usr/local/currents/bin

2018-03-07 20:20:31,634 INFO     repeater     task os75bb_beamplots ended after 1.0 seconds
2018-03-07 20:20:31,634 INFO     repeater     task os75bb_beamplots starting 7.7 seconds late
2018-03-07 20:20:32,590 INFO     repeater     task os75bb_beamplots output:
Starting procsetup
scriptpath is /usr/local/currents/bin

2018-03-07 20:20:32,591 INFO     repeater     task os75bb_beamplots ended after 1.0 seconds
2018-03-07 20:20:32,591 INFO     repeater     task os75nb_3dayplots starting 8.7 seconds late
2018-03-07 20:20:36,162 INFO     repeater     task os75nb_3dayplots ended after 3.6 seconds
2018-03-07 20:20:36,162 INFO     repeater     task os75nb_tsstats starting 12.2 seconds late
2018-03-07 20:20:36,698 INFO     repeater     task os75nb_tsstats ended after 0.5 seconds
2018-03-07 20:20:36,698 INFO     repeater     task os75nb_10pings starting 12.8 seconds late
2018-03-07 20:20:36,798 INFO     repeater     task os75nb_10pings ended after 0.1 seconds
2018-03-07 20:20:36,798 INFO     repeater     task os75nb_beamplots starting 12.9 seconds late
2018-03-07 20:20:37,808 INFO     repeater     task os75nb_beamplots output:
Starting procsetup
scriptpath is /usr/local/currents/bin

2018-03-07 20:20:37,808 INFO     repeater     task os75nb_beamplots ended after 1.0 seconds
2018-03-07 20:20:37,808 INFO     repeater     task os75nb_beamplots starting 13.9 seconds late
2018-03-07 20:20:38,782 INFO     repeater     task os75nb_beamplots output:
Starting procsetup
scriptpath is /usr/local/currents/bin

2018-03-07 20:20:38,782 INFO     repeater     task os75nb_beamplots ended after 1.0 seconds
2018-03-07 20:20:38,782 INFO     repeater     task posmv_hcorrstats starting 14.7 seconds late
2018-03-07 20:20:39,542 INFO     repeater     task posmv_hcorrstats ended after 0.8 seconds
2018-03-07 20:20:39,542 INFO     repeater     task posmv_plotposmv starting 15.5 seconds late
2018-03-07 20:20:40,217 INFO     repeater     task posmv_plotposmv ended after 0.7 seconds
2018-03-07 20:20:40,217 INFO     repeater     task report_generator starting 16.1 seconds late
2018-03-07 20:20:43,875 INFO     repeater     task report_generator output:
cruisename is <RB1802_CAL>
cruisename is <RB1802_CAL>
report_dir is </home/data/RB1802_CAL/reports>
report_dir is </home/data/RB1802_CAL/reports>
uhdas_dir is </home/data/RB1802_CAL>
uhdas_dir is </home/data/RB1802_CAL>
0.0 sec : initial png rsync
0.0 sec : initial png rsync
0.0 sec : initial png rsync
0.0 sec : initial png rsync
1.0 sec :              navplot: plot_rnav.py -s300 --noshow  --title RB1802_CAL --outfile /home/data/RB1802_CAL/reports/nav_plot_all  /home/data/RB1802_CAL/rbin/gpsnav/*.gps.rbin
1.0 sec :              navplot: plot_rnav.py -s300 --noshow  --title RB1802_CAL --outfile /home/data/RB1802_CAL/reports/nav_plot_all  /home/data/RB1802_CAL/rbin/gpsnav/*.gps.rbin
0.0 sec :              navplot: convert  -resize 200  /home/data/RB1802_CAL/reports/nav_plot_all_topo.png /home/data/RB1802_CAL/reports/nav_plot_all_topoT.png 
0.0 sec :              navplot: convert  -resize 200  /home/data/RB1802_CAL/reports/nav_plot_all_topo.png /home/data/RB1802_CAL/reports/nav_plot_all_topoT.png 
0.0 sec :              navplot: convert  -resize 200  /home/data/RB1802_CAL/reports/nav_plot_all_txy.png /home/data/RB1802_CAL/reports/nav_plot_all_txyT.png 
0.0 sec :              navplot: convert  -resize 200  /home/data/RB1802_CAL/reports/nav_plot_all_txy.png /home/data/RB1802_CAL/reports/nav_plot_all_txyT.png 
0.0 sec :          png_archive: rsync -a /home/data/RB1802_CAL/proc/os75nb/png_archive/ /home/data/RB1802_CAL/reports/os75nb_pngarchive
0.0 sec :          png_archive: rsync -a /home/data/RB1802_CAL/proc/os75nb/png_archive/ /home/data/RB1802_CAL/reports/os75nb_pngarchive
0.0 sec :          png_archive: rsync -a /home/data/RB1802_CAL/proc/os75bb/png_archive/ /home/data/RB1802_CAL/reports/os75bb_pngarchive
0.0 sec :          png_archive: rsync -a /home/data/RB1802_CAL/proc/os75bb/png_archive/ /home/data/RB1802_CAL/reports/os75bb_pngarchive
0.0 sec :       uhdas_overview: uhdas_info.py --overview --logfile  /home/data/RB1802_CAL/reports/uhdas_overview.txt /home/data/RB1802_CAL
0.0 sec :       uhdas_overview: uhdas_info.py --overview --logfile  /home/data/RB1802_CAL/reports/uhdas_overview.txt /home/data/RB1802_CAL
0.0 sec :        sonar_summary: sonar_summary.py --outfile /home/data/RB1802_CAL/reports/sonar_summary.txt --uhdas_dir /home/data/RB1802_CAL 
0.0 sec :        sonar_summary: sonar_summary.py --outfile /home/data/RB1802_CAL/reports/sonar_summary.txt --uhdas_dir /home/data/RB1802_CAL 
0.0 sec :        adcp_settings: uhdas_info.py --settings --logfile  /home/data/RB1802_CAL/reports/ADCP_settings.txt /home/data/RB1802_CAL
0.0 sec :        adcp_settings: uhdas_info.py --settings --logfile  /home/data/RB1802_CAL/reports/ADCP_settings.txt /home/data/RB1802_CAL
0.0 sec :            adcp_cals: uhdas_info.py --cals    --logfile  /home/data/RB1802_CAL/reports/ADCP_cals.txt /home/data/RB1802_CAL
0.0 sec :            adcp_cals: uhdas_info.py --cals    --logfile  /home/data/RB1802_CAL/reports/ADCP_cals.txt /home/data/RB1802_CAL
1.0 sec :            ens_hcorr: plot_enshcorr.py --infile /home/data/RB1802_CAL/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1802_CAL/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv
1.0 sec :            ens_hcorr: plot_enshcorr.py --infile /home/data/RB1802_CAL/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1802_CAL/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv
1.0 sec :            ens_hcorr: plot_enshcorr.py --infile /home/data/RB1802_CAL/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1802_CAL/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv
1.0 sec :            ens_hcorr: plot_enshcorr.py --infile /home/data/RB1802_CAL/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1802_CAL/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv
1.0 sec :    hcorr_serial_plot: plot_posmv.py --cutoff  0.020 -s 60 -o /home/data/RB1802_CAL/reports/posmv_quality --noshow /home/data/RB1802_CAL
1.0 sec :    hcorr_serial_plot: plot_posmv.py --cutoff  0.020 -s 60 -o /home/data/RB1802_CAL/reports/posmv_quality --noshow /home/data/RB1802_CAL
0.0 sec :                pycfg: cp -p /home/data/RB1802_CAL/raw/config/RB1802_CAL_proc.py /home/data/RB1802_CAL/reports/RB1802_CAL_proc.py.txt
0.0 sec :                pycfg: cp -p /home/data/RB1802_CAL/raw/config/RB1802_CAL_proc.py /home/data/RB1802_CAL/reports/RB1802_CAL_proc.py.txt
0.0 sec :                pycfg: cp -p /home/data/RB1802_CAL/raw/config/RB1802_CAL_sensor.py /home/data/RB1802_CAL/reports/RB1802_CAL_sensor.py.txt
0.0 sec :                pycfg: cp -p /home/data/RB1802_CAL/raw/config/RB1802_CAL_sensor.py /home/data/RB1802_CAL/reports/RB1802_CAL_sensor.py.txt


3.0  seconds elapsed



3.0  seconds elapsed

html page starts here: /home/data/RB1802_CAL/reports/index.html
html page starts here: /home/data/RB1802_CAL/reports/index.html

2018-03-07 20:20:43,875 INFO     repeater     task report_generator ended after 3.7 seconds
2018-03-07 20:20:48,881 INFO     repeater     task os75bb_lastensq starting 10.9 seconds late
2018-03-07 20:20:50,929 INFO     repeater     task os75bb_lastensq ended after 2.0 seconds
2018-03-07 20:20:50,929 INFO     repeater     task os75bb_lastensq: Time from /home/data/RB1802_CAL/proc/os75bb/load/wrote_ens_time: 2018/03/07 20:20:28
2018-03-07 20:20:50,930 INFO     repeater     task os75nb_lastensq starting 12.9 seconds late
2018-03-07 20:20:52,222 ERROR    repeater     task os75nb_lastensq returncode 24
2018-03-07 20:20:52,222 INFO     repeater     task os75nb_lastensq output:
In body of run_lastensq.py
Traceback (most recent call last):
  File "/usr/local/currents/bin/run_lastensq.py", line 414, in <module>
    E(plotname = 'kt_vecprof', zbin=4) #colorscheme='day'
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 227, in __call__
    self.fig5 = self.plot_vecprof_ktvec(zbin=zbin, vcolor=vcolor)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 545, in plot_vecprof_ktvec
    self.plot_vecprof(fig=fig, ax=ax[0], zbin=zbin, vecscale=vecscale)
  File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 624, in plot_vecprof
    ax.quiver(0*zgood, zgood,
UnboundLocalError: local variable 'zgood' referenced before assignment

2018-03-07 20:20:52,222 INFO     repeater     task os75nb_lastensq ended after 1.3 seconds
2018-03-07 20:20:52,222 INFO     repeater     task os75nb_lastensq: Time from /home/data/RB1802_CAL/proc/os75nb/load/wrote_ens_time: 2018/03/07 20:20:28
2018-03-07 20:21:27,280 INFO     repeater     task os75bb_quick starting 3.4 seconds late
2018-03-07 20:21:29,367 INFO     repeater     task os75bb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)
/usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan.
  warnings.warn("Warning: converting a masked element to nan.")

2018-03-07 20:21:29,367 INFO     repeater     task os75bb_quick ended after 2.1 seconds
2018-03-07 20:21:29,367 INFO     repeater     task os75bb_lastvec starting 5.5 seconds late
2018-03-07 20:21:29,717 INFO     repeater     task os75bb_lastvec ended after 0.4 seconds
2018-03-07 20:21:29,718 INFO     repeater     task os75nb_quick starting 5.8 seconds late
2018-03-07 20:21:31,750 INFO     repeater     task os75nb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)
/usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan.
  warnings.warn("Warning: converting a masked element to nan.")

2018-03-07 20:21:31,750 INFO     repeater     task os75nb_quick ended after 2.0 seconds
2018-03-07 20:21:31,750 INFO     repeater     task os75nb_lastvec starting 7.8 seconds late
2018-03-07 20:21:32,125 INFO     repeater     task os75nb_lastvec ended after 0.4 seconds
2018-03-07 20:25:27,713 INFO     repeater     task os75bb_3dayplots starting 3.8 seconds late
2018-03-07 20:25:31,272 INFO     repeater     task os75bb_3dayplots ended after 3.6 seconds
2018-03-07 20:25:31,274 INFO     repeater     task os75nb_3dayplots starting 7.4 seconds late
2018-03-07 20:25:34,844 INFO     repeater     task os75nb_3dayplots ended after 3.6 seconds
2018-03-07 20:25:39,851 INFO     repeater     task os75bb_lastensq starting 1.9 seconds late
2018-03-07 20:25:41,844 INFO     repeater     task os75bb_lastensq ended after 2.0 seconds
2018-03-07 20:25:41,845 INFO     repeater     task os75bb_lastensq: Time from /home/data/RB1802_CAL/proc/os75bb/load/wrote_ens_time: 2018/03/07 20:25:28
2018-03-07 20:25:41,846 INFO     repeater     task os75nb_lastensq starting 3.8 seconds late
2018-03-07 20:25:43,228 INFO     repeater     task os75nb_lastensq ended after 1.4 seconds
2018-03-07 20:25:43,228 INFO     repeater     task os75nb_lastensq: Time from /home/data/RB1802_CAL/proc/os75nb/load/wrote_ens_time: 2018/03/07 20:25:28
2018-03-07 20:26:38,364 INFO     repeater     task os75bb_quick starting 4.5 seconds late
2018-03-07 20:26:40,350 INFO     repeater     task os75bb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)
/usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan.
  warnings.warn("Warning: converting a masked element to nan.")

2018-03-07 20:26:40,350 INFO     repeater     task os75bb_quick ended after 2.0 seconds
2018-03-07 20:26:40,351 INFO     repeater     task os75bb_lastvec starting 6.4 seconds late
2018-03-07 20:26:40,686 INFO     repeater     task os75bb_lastvec ended after 0.3 seconds
2018-03-07 20:26:40,687 INFO     repeater     task os75nb_quick starting 6.8 seconds late
2018-03-07 20:26:42,701 INFO     repeater     task os75nb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)
/usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan.
  warnings.warn("Warning: converting a masked element to nan.")

2018-03-07 20:26:42,701 INFO     repeater     task os75nb_quick ended after 2.0 seconds
2018-03-07 20:26:42,702 INFO     repeater     task os75nb_lastvec starting 8.8 seconds late
2018-03-07 20:26:43,052 INFO     repeater     task os75nb_lastvec ended after 0.3 seconds
2018-03-07 20:30:28,618 INFO     repeater     task os75bb_3dayplots starting 4.7 seconds late
2018-03-07 20:30:32,161 INFO     repeater     task os75bb_3dayplots ended after 3.5 seconds
2018-03-07 20:30:32,163 INFO     repeater     task os75nb_3dayplots starting 8.2 seconds late
2018-03-07 20:30:35,761 INFO     repeater     task os75nb_3dayplots ended after 3.6 seconds
2018-03-07 20:30:40,768 INFO     repeater     task os75bb_lastensq starting 2.8 seconds late
2018-03-07 20:30:42,694 INFO     repeater     task os75bb_lastensq ended after 1.9 seconds
2018-03-07 20:30:42,695 INFO     repeater     task os75bb_lastensq: Time from /home/data/RB1802_CAL/proc/os75bb/load/wrote_ens_time: 2018/03/07 20:30:28
2018-03-07 20:30:42,696 INFO     repeater     task os75nb_lastensq starting 4.7 seconds late
2018-03-07 20:30:44,178 INFO     repeater     task os75nb_lastensq ended after 1.5 seconds
2018-03-07 20:30:44,178 INFO     repeater     task os75nb_lastensq: Time from /home/data/RB1802_CAL/proc/os75nb/load/wrote_ens_time: 2018/03/07 20:30:28
2018-03-07 20:31:44,296 INFO     repeater     task os75bb_quick starting 0.4 seconds late
2018-03-07 20:31:46,256 INFO     repeater     task os75bb_quick output:
/usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan.
  warnings.warn("Warning: converting a masked element to nan.")
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)

2018-03-07 20:31:46,256 INFO     repeater     task os75bb_quick ended after 2.0 seconds
2018-03-07 20:31:46,257 INFO     repeater     task os75bb_lastvec starting 2.3 seconds late
2018-03-07 20:31:46,620 INFO     repeater     task os75bb_lastvec ended after 0.4 seconds
2018-03-07 20:31:46,621 INFO     repeater     task os75nb_quick starting 2.7 seconds late
2018-03-07 20:31:48,599 INFO     repeater     task os75nb_quick output:
/usr/lib/python2.7/dist-packages/numpy/ma/core.py:4139: UserWarning: Warning: converting a masked element to nan.
  warnings.warn("Warning: converting a masked element to nan.")
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)

2018-03-07 20:31:48,599 INFO     repeater     task os75nb_quick ended after 2.0 seconds
2018-03-07 20:31:48,599 INFO     repeater     task os75nb_lastvec starting 4.7 seconds late
2018-03-07 20:31:48,935 INFO     repeater     task os75nb_lastvec ended after 0.3 seconds
2018-03-07 20:35:24,465 INFO     repeater     task os75bb_3dayplots starting 0.6 seconds late
2018-03-07 20:35:27,998 INFO     repeater     task os75bb_3dayplots ended after 3.5 seconds
2018-03-07 20:35:27,998 INFO     repeater     task os75bb_tsstats starting 4.1 seconds late
2018-03-07 20:35:28,549 INFO     repeater     task os75bb_tsstats ended after 0.6 seconds
2018-03-07 20:35:28,549 INFO     repeater     task os75bb_10pings starting 4.6 seconds late
2018-03-07 20:35:28,651 INFO     repeater     task os75bb_10pings ended after 0.1 seconds
2018-03-07 20:35:28,651 INFO     repeater     task os75bb_beamplots starting 4.7 seconds late
2018-03-07 20:35:29,655 INFO     repeater     task os75bb_beamplots output:
Starting procsetup
scriptpath is /usr/local/currents/bin

2018-03-07 20:35:29,655 INFO     repeater     task os75bb_beamplots ended after 1.0 seconds
2018-03-07 20:35:29,655 INFO     repeater     task os75bb_beamplots starting 5.7 seconds late
2018-03-07 20:35:30,636 INFO     repeater     task os75bb_beamplots output:
Starting procsetup
scriptpath is /usr/local/currents/bin

2018-03-07 20:35:30,636 INFO     repeater     task os75bb_beamplots ended after 1.0 seconds
2018-03-07 20:35:30,637 INFO     repeater     task os75nb_3dayplots starting 6.7 seconds late
2018-03-07 20:35:34,211 INFO     repeater     task os75nb_3dayplots ended after 3.6 seconds
2018-03-07 20:35:34,212 INFO     repeater     task os75nb_tsstats starting 10.3 seconds late
2018-03-07 20:35:34,747 INFO     repeater     task os75nb_tsstats ended after 0.5 seconds
2018-03-07 20:35:34,747 INFO     repeater     task os75nb_10pings starting 10.8 seconds late
2018-03-07 20:35:34,842 INFO     repeater     task os75nb_10pings ended after 0.1 seconds
2018-03-07 20:35:34,843 INFO     repeater     task os75nb_beamplots starting 10.9 seconds late
2018-03-07 20:35:35,799 INFO     repeater     task os75nb_beamplots output:
Starting procsetup
scriptpath is /usr/local/currents/bin

2018-03-07 20:35:35,799 INFO     repeater     task os75nb_beamplots ended after 1.0 seconds
2018-03-07 20:35:35,800 INFO     repeater     task os75nb_beamplots starting 11.9 seconds late
2018-03-07 20:35:36,788 INFO     repeater     task os75nb_beamplots output:
Starting procsetup
scriptpath is /usr/local/currents/bin

2018-03-07 20:35:36,788 INFO     repeater     task os75nb_beamplots ended after 1.0 seconds
2018-03-07 20:35:36,788 INFO     repeater     task posmv_hcorrstats starting 12.7 seconds late
2018-03-07 20:35:37,564 INFO     repeater     task posmv_hcorrstats ended after 0.8 seconds
2018-03-07 20:35:37,564 INFO     repeater     task posmv_plotposmv starting 13.5 seconds late
2018-03-07 20:35:38,294 INFO     repeater     task posmv_plotposmv ended after 0.7 seconds
2018-03-07 20:35:38,294 INFO     repeater     task report_generator starting 14.2 seconds late
2018-03-07 20:35:41,890 INFO     repeater     task report_generator output:
cruisename is <RB1802_CAL>
cruisename is <RB1802_CAL>
report_dir is </home/data/RB1802_CAL/reports>
report_dir is </home/data/RB1802_CAL/reports>
uhdas_dir is </home/data/RB1802_CAL>
uhdas_dir is </home/data/RB1802_CAL>
0.0 sec : initial png rsync
0.0 sec : initial png rsync
0.0 sec : initial png rsync
0.0 sec : initial png rsync
1.0 sec :              navplot: plot_rnav.py -s300 --noshow  --title RB1802_CAL --outfile /home/data/RB1802_CAL/reports/nav_plot_all  /home/data/RB1802_CAL/rbin/gpsnav/*.gps.rbin
1.0 sec :              navplot: plot_rnav.py -s300 --noshow  --title RB1802_CAL --outfile /home/data/RB1802_CAL/reports/nav_plot_all  /home/data/RB1802_CAL/rbin/gpsnav/*.gps.rbin
0.0 sec :              navplot: convert  -resize 200  /home/data/RB1802_CAL/reports/nav_plot_all_topo.png /home/data/RB1802_CAL/reports/nav_plot_all_topoT.png 
0.0 sec :              navplot: convert  -resize 200  /home/data/RB1802_CAL/reports/nav_plot_all_topo.png /home/data/RB1802_CAL/reports/nav_plot_all_topoT.png 
0.0 sec :              navplot: convert  -resize 200  /home/data/RB1802_CAL/reports/nav_plot_all_txy.png /home/data/RB1802_CAL/reports/nav_plot_all_txyT.png 
0.0 sec :              navplot: convert  -resize 200  /home/data/RB1802_CAL/reports/nav_plot_all_txy.png /home/data/RB1802_CAL/reports/nav_plot_all_txyT.png 
0.0 sec :          png_archive: rsync -a /home/data/RB1802_CAL/proc/os75nb/png_archive/ /home/data/RB1802_CAL/reports/os75nb_pngarchive
0.0 sec :          png_archive: rsync -a /home/data/RB1802_CAL/proc/os75nb/png_archive/ /home/data/RB1802_CAL/reports/os75nb_pngarchive
0.0 sec :          png_archive: rsync -a /home/data/RB1802_CAL/proc/os75bb/png_archive/ /home/data/RB1802_CAL/reports/os75bb_pngarchive
0.0 sec :          png_archive: rsync -a /home/data/RB1802_CAL/proc/os75bb/png_archive/ /home/data/RB1802_CAL/reports/os75bb_pngarchive
0.0 sec :       uhdas_overview: uhdas_info.py --overview --logfile  /home/data/RB1802_CAL/reports/uhdas_overview.txt /home/data/RB1802_CAL
0.0 sec :       uhdas_overview: uhdas_info.py --overview --logfile  /home/data/RB1802_CAL/reports/uhdas_overview.txt /home/data/RB1802_CAL
0.0 sec :        sonar_summary: sonar_summary.py --outfile /home/data/RB1802_CAL/reports/sonar_summary.txt --uhdas_dir /home/data/RB1802_CAL 
0.0 sec :        sonar_summary: sonar_summary.py --outfile /home/data/RB1802_CAL/reports/sonar_summary.txt --uhdas_dir /home/data/RB1802_CAL 
0.0 sec :        adcp_settings: uhdas_info.py --settings --logfile  /home/data/RB1802_CAL/reports/ADCP_settings.txt /home/data/RB1802_CAL
0.0 sec :        adcp_settings: uhdas_info.py --settings --logfile  /home/data/RB1802_CAL/reports/ADCP_settings.txt /home/data/RB1802_CAL
0.0 sec :            adcp_cals: uhdas_info.py --cals    --logfile  /home/data/RB1802_CAL/reports/ADCP_cals.txt /home/data/RB1802_CAL
0.0 sec :            adcp_cals: uhdas_info.py --cals    --logfile  /home/data/RB1802_CAL/reports/ADCP_cals.txt /home/data/RB1802_CAL
1.0 sec :            ens_hcorr: plot_enshcorr.py --infile /home/data/RB1802_CAL/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1802_CAL/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv
1.0 sec :            ens_hcorr: plot_enshcorr.py --infile /home/data/RB1802_CAL/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1802_CAL/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv
1.0 sec :            ens_hcorr: plot_enshcorr.py --infile /home/data/RB1802_CAL/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1802_CAL/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv
1.0 sec :            ens_hcorr: plot_enshcorr.py --infile /home/data/RB1802_CAL/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1802_CAL/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv
1.0 sec :    hcorr_serial_plot: plot_posmv.py --cutoff  0.020 -s 60 -o /home/data/RB1802_CAL/reports/posmv_quality --noshow /home/data/RB1802_CAL
1.0 sec :    hcorr_serial_plot: plot_posmv.py --cutoff  0.020 -s 60 -o /home/data/RB1802_CAL/reports/posmv_quality --noshow /home/data/RB1802_CAL
0.0 sec :                pycfg: cp -p /home/data/RB1802_CAL/raw/config/RB1802_CAL_proc.py /home/data/RB1802_CAL/reports/RB1802_CAL_proc.py.txt
0.0 sec :                pycfg: cp -p /home/data/RB1802_CAL/raw/config/RB1802_CAL_proc.py /home/data/RB1802_CAL/reports/RB1802_CAL_proc.py.txt
0.0 sec :                pycfg: cp -p /home/data/RB1802_CAL/raw/config/RB1802_CAL_sensor.py /home/data/RB1802_CAL/reports/RB1802_CAL_sensor.py.txt
0.0 sec :                pycfg: cp -p /home/data/RB1802_CAL/raw/config/RB1802_CAL_sensor.py /home/data/RB1802_CAL/reports/RB1802_CAL_sensor.py.txt


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html page starts here: /home/data/RB1802_CAL/reports/index.html
html page starts here: /home/data/RB1802_CAL/reports/index.html

2018-03-07 20:35:41,890 INFO     repeater     task report_generator ended after 3.6 seconds
2018-03-07 20:35:46,893 INFO     repeater     task os75bb_lastensq starting 8.9 seconds late
2018-03-07 20:35:48,833 INFO     repeater     task os75bb_lastensq ended after 1.9 seconds
2018-03-07 20:35:48,833 INFO     repeater     task os75bb_lastensq: Time from /home/data/RB1802_CAL/proc/os75bb/load/wrote_ens_time: 2018/03/07 20:35:28
2018-03-07 20:35:48,835 INFO     repeater     task os75nb_lastensq starting 10.8 seconds late
2018-03-07 20:35:50,304 INFO     repeater     task os75nb_lastensq ended after 1.5 seconds
2018-03-07 20:35:50,304 INFO     repeater     task os75nb_lastensq: Time from /home/data/RB1802_CAL/proc/os75nb/load/wrote_ens_time: 2018/03/07 20:35:28
2018-03-07 20:36:55,466 INFO     repeater     task os75bb_quick starting 1.6 seconds late
2018-03-07 20:36:57,442 INFO     repeater     task os75bb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)

2018-03-07 20:36:57,442 INFO     repeater     task os75bb_quick ended after 2.0 seconds
2018-03-07 20:36:57,442 INFO     repeater     task os75bb_lastvec starting 3.5 seconds late
2018-03-07 20:36:57,784 INFO     repeater     task os75bb_lastvec ended after 0.3 seconds
2018-03-07 20:36:57,785 INFO     repeater     task os75nb_quick starting 3.9 seconds late
2018-03-07 20:36:59,837 INFO     repeater     task os75nb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)

2018-03-07 20:36:59,837 INFO     repeater     task os75nb_quick ended after 2.1 seconds
2018-03-07 20:36:59,837 INFO     repeater     task os75nb_lastvec starting 5.9 seconds late
2018-03-07 20:37:00,208 INFO     repeater     task os75nb_lastvec ended after 0.4 seconds
2018-03-07 20:40:25,773 INFO     repeater     task os75bb_3dayplots starting 1.9 seconds late
2018-03-07 20:40:29,312 INFO     repeater     task os75bb_3dayplots ended after 3.5 seconds
2018-03-07 20:40:29,314 INFO     repeater     task os75nb_3dayplots starting 5.4 seconds late
2018-03-07 20:40:32,838 INFO     repeater     task os75nb_3dayplots ended after 3.5 seconds
2018-03-07 20:40:42,857 INFO     repeater     task os75bb_lastensq starting 4.9 seconds late
2018-03-07 20:40:44,843 INFO     repeater     task os75bb_lastensq ended after 2.0 seconds
2018-03-07 20:40:44,843 INFO     repeater     task os75bb_lastensq: Time from /home/data/RB1802_CAL/proc/os75bb/load/wrote_ens_time: 2018/03/07 20:40:28
2018-03-07 20:40:44,844 INFO     repeater     task os75nb_lastensq starting 6.8 seconds late
2018-03-07 20:40:46,317 INFO     repeater     task os75nb_lastensq ended after 1.5 seconds
2018-03-07 20:40:46,318 INFO     repeater     task os75nb_lastensq: Time from /home/data/RB1802_CAL/proc/os75nb/load/wrote_ens_time: 2018/03/07 20:40:28
2018-03-07 20:42:06,504 INFO     repeater     task os75bb_quick starting 2.6 seconds late
2018-03-07 20:42:08,518 INFO     repeater     task os75bb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)

2018-03-07 20:42:08,518 INFO     repeater     task os75bb_quick ended after 2.0 seconds
2018-03-07 20:42:08,518 INFO     repeater     task os75bb_lastvec starting 4.6 seconds late
2018-03-07 20:42:08,864 INFO     repeater     task os75bb_lastvec ended after 0.3 seconds
2018-03-07 20:42:08,865 INFO     repeater     task os75nb_quick starting 4.9 seconds late
2018-03-07 20:42:10,897 INFO     repeater     task os75nb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)

2018-03-07 20:42:10,897 INFO     repeater     task os75nb_quick ended after 2.0 seconds
2018-03-07 20:42:10,897 INFO     repeater     task os75nb_lastvec starting 7.0 seconds late
2018-03-07 20:42:11,272 INFO     repeater     task os75nb_lastvec ended after 0.4 seconds
2018-03-07 20:45:26,774 INFO     repeater     task os75bb_3dayplots starting 2.9 seconds late
2018-03-07 20:45:30,321 INFO     repeater     task os75bb_3dayplots ended after 3.5 seconds
2018-03-07 20:45:30,322 INFO     repeater     task os75nb_3dayplots starting 6.4 seconds late
2018-03-07 20:45:33,966 INFO     repeater     task os75nb_3dayplots ended after 3.6 seconds
2018-03-07 20:45:38,973 INFO     repeater     task os75bb_lastensq starting 1.0 seconds late
2018-03-07 20:45:41,074 INFO     repeater     task os75bb_lastensq ended after 2.1 seconds
2018-03-07 20:45:41,074 INFO     repeater     task os75bb_lastensq: Time from /home/data/RB1802_CAL/proc/os75bb/load/wrote_ens_time: 2018/03/07 20:45:28
2018-03-07 20:45:41,075 INFO     repeater     task os75nb_lastensq starting 3.1 seconds late
2018-03-07 20:45:42,475 INFO     repeater     task os75nb_lastensq ended after 1.4 seconds
2018-03-07 20:45:42,475 INFO     repeater     task os75nb_lastensq: Time from /home/data/RB1802_CAL/proc/os75nb/load/wrote_ens_time: 2018/03/07 20:45:28
2018-03-07 20:47:17,714 INFO     repeater     task os75bb_quick starting 3.8 seconds late
2018-03-07 20:47:19,780 INFO     repeater     task os75bb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)

2018-03-07 20:47:19,780 INFO     repeater     task os75bb_quick ended after 2.1 seconds
2018-03-07 20:47:19,780 INFO     repeater     task os75bb_lastvec starting 5.9 seconds late
2018-03-07 20:47:20,162 INFO     repeater     task os75bb_lastvec ended after 0.4 seconds
2018-03-07 20:47:20,163 INFO     repeater     task os75nb_quick starting 6.2 seconds late
2018-03-07 20:47:22,126 INFO     repeater     task os75nb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)

2018-03-07 20:47:22,127 INFO     repeater     task os75nb_quick ended after 2.0 seconds
2018-03-07 20:47:22,127 INFO     repeater     task os75nb_lastvec starting 8.2 seconds late
2018-03-07 20:47:22,499 INFO     repeater     task os75nb_lastvec ended after 0.4 seconds
2018-03-07 20:50:27,987 INFO     repeater     task os75bb_3dayplots starting 4.1 seconds late
2018-03-07 20:50:31,464 INFO     repeater     task os75bb_3dayplots ended after 3.5 seconds
2018-03-07 20:50:31,464 INFO     repeater     task os75bb_tsstats starting 7.5 seconds late
2018-03-07 20:50:32,031 INFO     repeater     task os75bb_tsstats ended after 0.6 seconds
2018-03-07 20:50:32,031 INFO     repeater     task os75bb_10pings starting 8.1 seconds late
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2018-03-07 20:50:32,136 INFO     repeater     task os75bb_beamplots starting 8.2 seconds late
2018-03-07 20:50:33,166 INFO     repeater     task os75bb_beamplots output:
Starting procsetup
scriptpath is /usr/local/currents/bin

2018-03-07 20:50:33,166 INFO     repeater     task os75bb_beamplots ended after 1.0 seconds
2018-03-07 20:50:33,167 INFO     repeater     task os75bb_beamplots starting 9.3 seconds late
2018-03-07 20:50:34,132 INFO     repeater     task os75bb_beamplots output:
Starting procsetup
scriptpath is /usr/local/currents/bin

2018-03-07 20:50:34,132 INFO     repeater     task os75bb_beamplots ended after 1.0 seconds
2018-03-07 20:50:34,132 INFO     repeater     task os75nb_3dayplots starting 10.2 seconds late
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2018-03-07 20:50:37,705 INFO     repeater     task os75nb_tsstats starting 13.8 seconds late
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2018-03-07 20:50:38,255 INFO     repeater     task os75nb_10pings starting 14.3 seconds late
2018-03-07 20:50:38,351 INFO     repeater     task os75nb_10pings ended after 0.1 seconds
2018-03-07 20:50:38,351 INFO     repeater     task os75nb_beamplots starting 14.4 seconds late
2018-03-07 20:50:39,284 INFO     repeater     task os75nb_beamplots output:
Starting procsetup
scriptpath is /usr/local/currents/bin

2018-03-07 20:50:39,284 INFO     repeater     task os75nb_beamplots ended after 0.9 seconds
2018-03-07 20:50:39,284 INFO     repeater     task os75nb_beamplots starting 15.4 seconds late
2018-03-07 20:50:40,274 INFO     repeater     task os75nb_beamplots output:
Starting procsetup
scriptpath is /usr/local/currents/bin

2018-03-07 20:50:40,274 INFO     repeater     task os75nb_beamplots ended after 1.0 seconds
2018-03-07 20:50:40,274 INFO     repeater     task posmv_hcorrstats starting 16.2 seconds late
2018-03-07 20:50:41,064 INFO     repeater     task posmv_hcorrstats ended after 0.8 seconds
2018-03-07 20:50:41,064 INFO     repeater     task posmv_plotposmv starting 17.0 seconds late
2018-03-07 20:50:41,822 INFO     repeater     task posmv_plotposmv ended after 0.8 seconds
2018-03-07 20:50:41,822 INFO     repeater     task report_generator starting 17.7 seconds late
2018-03-07 20:50:45,426 INFO     repeater     task report_generator output:
cruisename is <RB1802_CAL>
cruisename is <RB1802_CAL>
report_dir is </home/data/RB1802_CAL/reports>
report_dir is </home/data/RB1802_CAL/reports>
uhdas_dir is </home/data/RB1802_CAL>
uhdas_dir is </home/data/RB1802_CAL>
0.0 sec : initial png rsync
0.0 sec : initial png rsync
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0.0 sec : initial png rsync
1.0 sec :              navplot: plot_rnav.py -s300 --noshow  --title RB1802_CAL --outfile /home/data/RB1802_CAL/reports/nav_plot_all  /home/data/RB1802_CAL/rbin/gpsnav/*.gps.rbin
1.0 sec :              navplot: plot_rnav.py -s300 --noshow  --title RB1802_CAL --outfile /home/data/RB1802_CAL/reports/nav_plot_all  /home/data/RB1802_CAL/rbin/gpsnav/*.gps.rbin
0.0 sec :              navplot: convert  -resize 200  /home/data/RB1802_CAL/reports/nav_plot_all_topo.png /home/data/RB1802_CAL/reports/nav_plot_all_topoT.png 
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0.0 sec :              navplot: convert  -resize 200  /home/data/RB1802_CAL/reports/nav_plot_all_txy.png /home/data/RB1802_CAL/reports/nav_plot_all_txyT.png 
0.0 sec :          png_archive: rsync -a /home/data/RB1802_CAL/proc/os75nb/png_archive/ /home/data/RB1802_CAL/reports/os75nb_pngarchive
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0.0 sec :          png_archive: rsync -a /home/data/RB1802_CAL/proc/os75bb/png_archive/ /home/data/RB1802_CAL/reports/os75bb_pngarchive
0.0 sec :          png_archive: rsync -a /home/data/RB1802_CAL/proc/os75bb/png_archive/ /home/data/RB1802_CAL/reports/os75bb_pngarchive
0.0 sec :       uhdas_overview: uhdas_info.py --overview --logfile  /home/data/RB1802_CAL/reports/uhdas_overview.txt /home/data/RB1802_CAL
0.0 sec :       uhdas_overview: uhdas_info.py --overview --logfile  /home/data/RB1802_CAL/reports/uhdas_overview.txt /home/data/RB1802_CAL
0.0 sec :        sonar_summary: sonar_summary.py --outfile /home/data/RB1802_CAL/reports/sonar_summary.txt --uhdas_dir /home/data/RB1802_CAL 
0.0 sec :        sonar_summary: sonar_summary.py --outfile /home/data/RB1802_CAL/reports/sonar_summary.txt --uhdas_dir /home/data/RB1802_CAL 
0.0 sec :        adcp_settings: uhdas_info.py --settings --logfile  /home/data/RB1802_CAL/reports/ADCP_settings.txt /home/data/RB1802_CAL
0.0 sec :        adcp_settings: uhdas_info.py --settings --logfile  /home/data/RB1802_CAL/reports/ADCP_settings.txt /home/data/RB1802_CAL
0.0 sec :            adcp_cals: uhdas_info.py --cals    --logfile  /home/data/RB1802_CAL/reports/ADCP_cals.txt /home/data/RB1802_CAL
0.0 sec :            adcp_cals: uhdas_info.py --cals    --logfile  /home/data/RB1802_CAL/reports/ADCP_cals.txt /home/data/RB1802_CAL
1.0 sec :            ens_hcorr: plot_enshcorr.py --infile /home/data/RB1802_CAL/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1802_CAL/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv
1.0 sec :            ens_hcorr: plot_enshcorr.py --infile /home/data/RB1802_CAL/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1802_CAL/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv
1.0 sec :            ens_hcorr: plot_enshcorr.py --infile /home/data/RB1802_CAL/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1802_CAL/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv
1.0 sec :            ens_hcorr: plot_enshcorr.py --infile /home/data/RB1802_CAL/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1802_CAL/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv
1.0 sec :    hcorr_serial_plot: plot_posmv.py --cutoff  0.020 -s 60 -o /home/data/RB1802_CAL/reports/posmv_quality --noshow /home/data/RB1802_CAL
1.0 sec :    hcorr_serial_plot: plot_posmv.py --cutoff  0.020 -s 60 -o /home/data/RB1802_CAL/reports/posmv_quality --noshow /home/data/RB1802_CAL
0.0 sec :                pycfg: cp -p /home/data/RB1802_CAL/raw/config/RB1802_CAL_proc.py /home/data/RB1802_CAL/reports/RB1802_CAL_proc.py.txt
0.0 sec :                pycfg: cp -p /home/data/RB1802_CAL/raw/config/RB1802_CAL_proc.py /home/data/RB1802_CAL/reports/RB1802_CAL_proc.py.txt
0.0 sec :                pycfg: cp -p /home/data/RB1802_CAL/raw/config/RB1802_CAL_sensor.py /home/data/RB1802_CAL/reports/RB1802_CAL_sensor.py.txt
0.0 sec :                pycfg: cp -p /home/data/RB1802_CAL/raw/config/RB1802_CAL_sensor.py /home/data/RB1802_CAL/reports/RB1802_CAL_sensor.py.txt


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html page starts here: /home/data/RB1802_CAL/reports/index.html
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2018-03-07 20:50:45,426 INFO     repeater     task report_generator ended after 3.6 seconds
2018-03-07 20:50:50,432 INFO     repeater     task os75bb_lastensq starting 12.4 seconds late
2018-03-07 20:50:52,413 INFO     repeater     task os75bb_lastensq ended after 2.0 seconds
2018-03-07 20:50:52,413 INFO     repeater     task os75bb_lastensq: Time from /home/data/RB1802_CAL/proc/os75bb/load/wrote_ens_time: 2018/03/07 20:50:28
2018-03-07 20:50:52,414 INFO     repeater     task os75nb_lastensq starting 14.4 seconds late
2018-03-07 20:50:53,896 INFO     repeater     task os75nb_lastensq ended after 1.5 seconds
2018-03-07 20:50:53,897 INFO     repeater     task os75nb_lastensq: Time from /home/data/RB1802_CAL/proc/os75nb/load/wrote_ens_time: 2018/03/07 20:50:28
2018-03-07 20:52:24,096 INFO     repeater     task os75bb_quick starting 0.2 seconds late
2018-03-07 20:52:26,071 INFO     repeater     task os75bb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)

2018-03-07 20:52:26,071 INFO     repeater     task os75bb_quick ended after 2.0 seconds
2018-03-07 20:52:26,071 INFO     repeater     task os75bb_lastvec starting 2.2 seconds late
2018-03-07 20:52:26,415 INFO     repeater     task os75bb_lastvec ended after 0.3 seconds
2018-03-07 20:52:26,416 INFO     repeater     task os75nb_quick starting 2.5 seconds late
2018-03-07 20:52:28,501 INFO     repeater     task os75nb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)

2018-03-07 20:52:28,501 INFO     repeater     task os75nb_quick ended after 2.1 seconds
2018-03-07 20:52:28,502 INFO     repeater     task os75nb_lastvec starting 4.6 seconds late
2018-03-07 20:52:28,862 INFO     repeater     task os75nb_lastvec ended after 0.4 seconds
2018-03-07 20:55:24,275 INFO     repeater     task os75bb_3dayplots starting 0.4 seconds late
2018-03-07 20:55:27,815 INFO     repeater     task os75bb_3dayplots ended after 3.5 seconds
2018-03-07 20:55:27,816 INFO     repeater     task os75nb_3dayplots starting 3.9 seconds late
2018-03-07 20:55:31,419 INFO     repeater     task os75nb_3dayplots ended after 3.6 seconds
2018-03-07 20:55:41,439 INFO     repeater     task os75bb_lastensq starting 3.4 seconds late
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2018-03-07 20:55:43,463 INFO     repeater     task os75bb_lastensq: Time from /home/data/RB1802_CAL/proc/os75bb/load/wrote_ens_time: 2018/03/07 20:55:28
2018-03-07 20:55:43,464 INFO     repeater     task os75nb_lastensq starting 5.5 seconds late
2018-03-07 20:55:44,958 INFO     repeater     task os75nb_lastensq ended after 1.5 seconds
2018-03-07 20:55:44,958 INFO     repeater     task os75nb_lastensq: Time from /home/data/RB1802_CAL/proc/os75nb/load/wrote_ens_time: 2018/03/07 20:55:28
2018-03-07 20:57:35,224 INFO     repeater     task os75bb_quick starting 1.3 seconds late
2018-03-07 20:57:37,268 INFO     repeater     task os75bb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)

2018-03-07 20:57:37,268 INFO     repeater     task os75bb_quick ended after 2.0 seconds
2018-03-07 20:57:37,269 INFO     repeater     task os75bb_lastvec starting 3.4 seconds late
2018-03-07 20:57:37,625 INFO     repeater     task os75bb_lastvec ended after 0.4 seconds
2018-03-07 20:57:37,626 INFO     repeater     task os75nb_quick starting 3.7 seconds late
2018-03-07 20:57:39,726 INFO     repeater     task os75nb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)

2018-03-07 20:57:39,726 INFO     repeater     task os75nb_quick ended after 2.1 seconds
2018-03-07 20:57:39,726 INFO     repeater     task os75nb_lastvec starting 5.8 seconds late
2018-03-07 20:57:40,081 INFO     repeater     task os75nb_lastvec ended after 0.4 seconds
2018-03-07 21:00:25,500 INFO     repeater     task os75bb_3dayplots starting 1.6 seconds late
2018-03-07 21:00:29,194 INFO     repeater     task os75bb_3dayplots ended after 3.7 seconds
2018-03-07 21:00:29,195 INFO     repeater     task os75nb_3dayplots starting 5.3 seconds late
2018-03-07 21:00:32,759 INFO     repeater     task os75nb_3dayplots ended after 3.6 seconds
2018-03-07 21:00:42,782 INFO     repeater     task os75bb_lastensq starting 4.8 seconds late
2018-03-07 21:00:44,780 INFO     repeater     task os75bb_lastensq ended after 2.0 seconds
2018-03-07 21:00:44,780 INFO     repeater     task os75bb_lastensq: Time from /home/data/RB1802_CAL/proc/os75bb/load/wrote_ens_time: 2018/03/07 21:00:28
2018-03-07 21:00:44,781 INFO     repeater     task os75nb_lastensq starting 6.8 seconds late
2018-03-07 21:00:46,277 INFO     repeater     task os75nb_lastensq ended after 1.5 seconds
2018-03-07 21:00:46,277 INFO     repeater     task os75nb_lastensq: Time from /home/data/RB1802_CAL/proc/os75nb/load/wrote_ens_time: 2018/03/07 21:00:28
2018-03-07 21:02:46,594 INFO     repeater     task os75bb_quick starting 2.7 seconds late
2018-03-07 21:02:48,532 INFO     repeater     task os75bb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)

2018-03-07 21:02:48,532 INFO     repeater     task os75bb_quick ended after 1.9 seconds
2018-03-07 21:02:48,533 INFO     repeater     task os75bb_lastvec starting 4.6 seconds late
2018-03-07 21:02:48,889 INFO     repeater     task os75bb_lastvec ended after 0.4 seconds
2018-03-07 21:02:48,890 INFO     repeater     task os75nb_quick starting 5.0 seconds late
2018-03-07 21:02:50,886 INFO     repeater     task os75nb_quick ended after 2.0 seconds
2018-03-07 21:02:50,887 INFO     repeater     task os75nb_lastvec starting 7.0 seconds late
2018-03-07 21:02:51,247 INFO     repeater     task os75nb_lastvec ended after 0.4 seconds
2018-03-07 21:05:26,648 INFO     repeater     task os75bb_3dayplots starting 2.7 seconds late
2018-03-07 21:05:30,254 INFO     repeater     task os75bb_3dayplots ended after 3.6 seconds
2018-03-07 21:05:30,255 INFO     repeater     task os75bb_tsstats starting 6.3 seconds late
2018-03-07 21:05:30,812 INFO     repeater     task os75bb_tsstats ended after 0.6 seconds
2018-03-07 21:05:30,812 INFO     repeater     task os75bb_10pings starting 6.9 seconds late
2018-03-07 21:05:30,912 INFO     repeater     task os75bb_10pings ended after 0.1 seconds
2018-03-07 21:05:30,913 INFO     repeater     task os75bb_beamplots starting 7.0 seconds late
2018-03-07 21:05:31,920 INFO     repeater     task os75bb_beamplots output:
Starting procsetup
scriptpath is /usr/local/currents/bin

2018-03-07 21:05:31,921 INFO     repeater     task os75bb_beamplots ended after 1.0 seconds
2018-03-07 21:05:31,921 INFO     repeater     task os75bb_beamplots starting 8.0 seconds late
2018-03-07 21:05:32,877 INFO     repeater     task os75bb_beamplots output:
Starting procsetup
scriptpath is /usr/local/currents/bin

2018-03-07 21:05:32,877 INFO     repeater     task os75bb_beamplots ended after 1.0 seconds
2018-03-07 21:05:32,878 INFO     repeater     task os75nb_3dayplots starting 9.0 seconds late
2018-03-07 21:05:36,522 INFO     repeater     task os75nb_3dayplots ended after 3.6 seconds
2018-03-07 21:05:36,523 INFO     repeater     task os75nb_tsstats starting 12.6 seconds late
2018-03-07 21:05:37,043 INFO     repeater     task os75nb_tsstats ended after 0.5 seconds
2018-03-07 21:05:37,043 INFO     repeater     task os75nb_10pings starting 13.1 seconds late
2018-03-07 21:05:37,139 INFO     repeater     task os75nb_10pings ended after 0.1 seconds
2018-03-07 21:05:37,140 INFO     repeater     task os75nb_beamplots starting 13.2 seconds late
2018-03-07 21:05:38,077 INFO     repeater     task os75nb_beamplots output:
Starting procsetup
scriptpath is /usr/local/currents/bin

2018-03-07 21:05:38,078 INFO     repeater     task os75nb_beamplots ended after 0.9 seconds
2018-03-07 21:05:38,078 INFO     repeater     task os75nb_beamplots starting 14.2 seconds late
2018-03-07 21:05:39,097 INFO     repeater     task os75nb_beamplots output:
Starting procsetup
scriptpath is /usr/local/currents/bin

2018-03-07 21:05:39,097 INFO     repeater     task os75nb_beamplots ended after 1.0 seconds
2018-03-07 21:05:39,097 INFO     repeater     task posmv_hcorrstats starting 15.0 seconds late
2018-03-07 21:05:39,899 INFO     repeater     task posmv_hcorrstats ended after 0.8 seconds
2018-03-07 21:05:39,900 INFO     repeater     task posmv_plotposmv starting 15.8 seconds late
2018-03-07 21:05:40,692 INFO     repeater     task posmv_plotposmv ended after 0.8 seconds
2018-03-07 21:05:40,693 INFO     repeater     task report_generator starting 16.6 seconds late
2018-03-07 21:05:44,270 INFO     repeater     task report_generator output:
cruisename is <RB1802_CAL>
cruisename is <RB1802_CAL>
report_dir is </home/data/RB1802_CAL/reports>
report_dir is </home/data/RB1802_CAL/reports>
uhdas_dir is </home/data/RB1802_CAL>
uhdas_dir is </home/data/RB1802_CAL>
0.0 sec : initial png rsync
0.0 sec : initial png rsync
0.0 sec : initial png rsync
0.0 sec : initial png rsync
1.0 sec :              navplot: plot_rnav.py -s300 --noshow  --title RB1802_CAL --outfile /home/data/RB1802_CAL/reports/nav_plot_all  /home/data/RB1802_CAL/rbin/gpsnav/*.gps.rbin
1.0 sec :              navplot: plot_rnav.py -s300 --noshow  --title RB1802_CAL --outfile /home/data/RB1802_CAL/reports/nav_plot_all  /home/data/RB1802_CAL/rbin/gpsnav/*.gps.rbin
0.0 sec :              navplot: convert  -resize 200  /home/data/RB1802_CAL/reports/nav_plot_all_topo.png /home/data/RB1802_CAL/reports/nav_plot_all_topoT.png 
0.0 sec :              navplot: convert  -resize 200  /home/data/RB1802_CAL/reports/nav_plot_all_topo.png /home/data/RB1802_CAL/reports/nav_plot_all_topoT.png 
0.0 sec :              navplot: convert  -resize 200  /home/data/RB1802_CAL/reports/nav_plot_all_txy.png /home/data/RB1802_CAL/reports/nav_plot_all_txyT.png 
0.0 sec :              navplot: convert  -resize 200  /home/data/RB1802_CAL/reports/nav_plot_all_txy.png /home/data/RB1802_CAL/reports/nav_plot_all_txyT.png 
0.0 sec :          png_archive: rsync -a /home/data/RB1802_CAL/proc/os75nb/png_archive/ /home/data/RB1802_CAL/reports/os75nb_pngarchive
0.0 sec :          png_archive: rsync -a /home/data/RB1802_CAL/proc/os75nb/png_archive/ /home/data/RB1802_CAL/reports/os75nb_pngarchive
0.0 sec :          png_archive: rsync -a /home/data/RB1802_CAL/proc/os75bb/png_archive/ /home/data/RB1802_CAL/reports/os75bb_pngarchive
0.0 sec :          png_archive: rsync -a /home/data/RB1802_CAL/proc/os75bb/png_archive/ /home/data/RB1802_CAL/reports/os75bb_pngarchive
0.0 sec :       uhdas_overview: uhdas_info.py --overview --logfile  /home/data/RB1802_CAL/reports/uhdas_overview.txt /home/data/RB1802_CAL
0.0 sec :       uhdas_overview: uhdas_info.py --overview --logfile  /home/data/RB1802_CAL/reports/uhdas_overview.txt /home/data/RB1802_CAL
0.0 sec :        sonar_summary: sonar_summary.py --outfile /home/data/RB1802_CAL/reports/sonar_summary.txt --uhdas_dir /home/data/RB1802_CAL 
0.0 sec :        sonar_summary: sonar_summary.py --outfile /home/data/RB1802_CAL/reports/sonar_summary.txt --uhdas_dir /home/data/RB1802_CAL 
0.0 sec :        adcp_settings: uhdas_info.py --settings --logfile  /home/data/RB1802_CAL/reports/ADCP_settings.txt /home/data/RB1802_CAL
0.0 sec :        adcp_settings: uhdas_info.py --settings --logfile  /home/data/RB1802_CAL/reports/ADCP_settings.txt /home/data/RB1802_CAL
0.0 sec :            adcp_cals: uhdas_info.py --cals    --logfile  /home/data/RB1802_CAL/reports/ADCP_cals.txt /home/data/RB1802_CAL
0.0 sec :            adcp_cals: uhdas_info.py --cals    --logfile  /home/data/RB1802_CAL/reports/ADCP_cals.txt /home/data/RB1802_CAL
1.0 sec :            ens_hcorr: plot_enshcorr.py --infile /home/data/RB1802_CAL/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1802_CAL/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv
1.0 sec :            ens_hcorr: plot_enshcorr.py --infile /home/data/RB1802_CAL/proc/os75nb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1802_CAL/reports/os75nb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv
1.0 sec :            ens_hcorr: plot_enshcorr.py --infile /home/data/RB1802_CAL/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1802_CAL/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv
1.0 sec :            ens_hcorr: plot_enshcorr.py --infile /home/data/RB1802_CAL/proc/os75bb/cal/rotate/ens_hcorr.asc --outfile /home/data/RB1802_CAL/reports/os75bb_hcorr --yearbase 2018 --titlestring ens_hcorr_pmv
1.0 sec :    hcorr_serial_plot: plot_posmv.py --cutoff  0.020 -s 60 -o /home/data/RB1802_CAL/reports/posmv_quality --noshow /home/data/RB1802_CAL
1.0 sec :    hcorr_serial_plot: plot_posmv.py --cutoff  0.020 -s 60 -o /home/data/RB1802_CAL/reports/posmv_quality --noshow /home/data/RB1802_CAL
0.0 sec :                pycfg: cp -p /home/data/RB1802_CAL/raw/config/RB1802_CAL_proc.py /home/data/RB1802_CAL/reports/RB1802_CAL_proc.py.txt
0.0 sec :                pycfg: cp -p /home/data/RB1802_CAL/raw/config/RB1802_CAL_proc.py /home/data/RB1802_CAL/reports/RB1802_CAL_proc.py.txt
0.0 sec :                pycfg: cp -p /home/data/RB1802_CAL/raw/config/RB1802_CAL_sensor.py /home/data/RB1802_CAL/reports/RB1802_CAL_sensor.py.txt
0.0 sec :                pycfg: cp -p /home/data/RB1802_CAL/raw/config/RB1802_CAL_sensor.py /home/data/RB1802_CAL/reports/RB1802_CAL_sensor.py.txt


3.0  seconds elapsed



3.0  seconds elapsed

html page starts here: /home/data/RB1802_CAL/reports/index.html
html page starts here: /home/data/RB1802_CAL/reports/index.html

2018-03-07 21:05:44,271 INFO     repeater     task report_generator ended after 3.6 seconds
2018-03-07 21:05:49,277 INFO     repeater     task os75bb_lastensq starting 11.3 seconds late
2018-03-07 21:05:51,229 INFO     repeater     task os75bb_lastensq ended after 2.0 seconds
2018-03-07 21:05:51,229 INFO     repeater     task os75bb_lastensq: Time from /home/data/RB1802_CAL/proc/os75bb/load/wrote_ens_time: 2018/03/07 21:05:28
2018-03-07 21:05:51,230 INFO     repeater     task os75nb_lastensq starting 13.2 seconds late
2018-03-07 21:05:52,693 INFO     repeater     task os75nb_lastensq ended after 1.5 seconds
2018-03-07 21:05:52,693 INFO     repeater     task os75nb_lastensq: Time from /home/data/RB1802_CAL/proc/os75nb/load/wrote_ens_time: 2018/03/07 21:05:28
2018-03-07 21:07:58,030 INFO     repeater     task os75bb_quick starting 4.1 seconds late
2018-03-07 21:07:59,961 INFO     repeater     task os75bb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)

2018-03-07 21:07:59,961 INFO     repeater     task os75bb_quick ended after 1.9 seconds
2018-03-07 21:07:59,962 INFO     repeater     task os75bb_lastvec starting 6.0 seconds late
2018-03-07 21:08:00,320 INFO     repeater     task os75bb_lastvec ended after 0.4 seconds
2018-03-07 21:08:00,321 INFO     repeater     task os75nb_quick starting 6.4 seconds late
2018-03-07 21:08:02,339 INFO     repeater     task os75nb_quick ended after 2.0 seconds
2018-03-07 21:08:02,339 INFO     repeater     task os75nb_lastvec starting 8.4 seconds late
2018-03-07 21:08:02,689 INFO     repeater     task os75nb_lastvec ended after 0.3 seconds
2018-03-07 21:10:28,072 INFO     repeater     task os75bb_3dayplots starting 4.2 seconds late
2018-03-07 21:10:31,689 INFO     repeater     task os75bb_3dayplots ended after 3.6 seconds
2018-03-07 21:10:31,691 INFO     repeater     task os75nb_3dayplots starting 7.8 seconds late
2018-03-07 21:10:35,305 INFO     repeater     task os75nb_3dayplots ended after 3.6 seconds
2018-03-07 21:10:40,312 INFO     repeater     task os75bb_lastensq starting 2.3 seconds late
2018-03-07 21:10:42,296 INFO     repeater     task os75bb_lastensq ended after 2.0 seconds
2018-03-07 21:10:42,296 INFO     repeater     task os75bb_lastensq: Time from /home/data/RB1802_CAL/proc/os75bb/load/wrote_ens_time: 2018/03/07 21:10:28
2018-03-07 21:10:42,298 INFO     repeater     task os75nb_lastensq starting 4.3 seconds late
2018-03-07 21:10:43,778 INFO     repeater     task os75nb_lastensq ended after 1.5 seconds
2018-03-07 21:10:43,778 INFO     repeater     task os75nb_lastensq: Time from /home/data/RB1802_CAL/proc/os75nb/load/wrote_ens_time: 2018/03/07 21:10:28
2018-03-07 21:13:04,146 INFO     repeater     task os75bb_quick starting 0.2 seconds late
2018-03-07 21:13:06,091 INFO     repeater     task os75bb_quick output:
/usr/lib/python2.7/dist-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)

2018-03-07 21:13:06,091 INFO     repeater     task os75bb_quick ended after 1.9 seconds
2018-03-07 21:13:06,091 INFO     repeater     task os75bb_lastvec starting 2.2 seconds late
2018-03-07 21:13:06,440 INFO     repeater     task os75bb_lastvec ended after 0.3 seconds
2018-03-07 21:13:06,441 INFO     repeater     task os75nb_quick starting 2.5 seconds late
2018-03-07 21:13:08,484 INFO     repeater     task os75nb_quick ended after 2.0 seconds
2018-03-07 21:13:08,484 INFO     repeater     task os75nb_lastvec starting 4.6 seconds late
2018-03-07 21:13:08,847 INFO     repeater     task os75nb_lastvec ended after 0.4 seconds
2018-03-07 21:15:24,226 INFO     repeater     task os75bb_3dayplots starting 0.3 seconds late
2018-03-07 21:15:27,756 INFO     repeater     task os75bb_3dayplots ended after 3.5 seconds
2018-03-07 21:15:27,757 INFO     repeater     task os75nb_3dayplots starting 3.8 seconds late
2018-03-07 21:15:31,382 INFO     repeater     task os75nb_3dayplots ended after 3.6 seconds
2018-03-07 21:15:41,401 INFO     repeater     task os75bb_lastensq starting 3.4 seconds late
2018-03-07 21:15:43,418 INFO     repeater     task os75bb_lastensq ended after 2.0 seconds
2018-03-07 21:15:43,418 INFO     repeater     task os75bb_lastensq: Time from /home/data/RB1802_CAL/proc/os75bb/load/wrote_ens_time: 2018/03/07 21:15:28
2018-03-07 21:15:43,419 INFO     repeater     task os75nb_lastensq starting 5.4 seconds late